Hg_chrom5_TN10mRNA_9110
Organism: Heterodera glycines Gene Locus: chr5:1396364-1397247 Feature type: polypeptideProtein Sequence
Length: 153
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.608 | 0.76 | 0.713 | 0.676 | 0.545 | 0.67 | 0.934 | 0.327 | 1.598 | 0.618 | 0.99 | 1.153 | 3.086 | 1.508 | 0.667 | 1.307 | 1.179 | 1.089 | 2.011 | 0.769 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_8567
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
16-Females_and_Males
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm|nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.521
|
0.509
|
0.073
|
0.489
|
0.179
|
0.138
|
0.100
|
0.283
|
0.076
|
0.168
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000786
|
5.000
|
1.000
|
Hsc_gene_19097.t1
|
— | — |
Q17172.2 Peroxiredoxin 2 [Brugia malayi]
|
AHW98771.1 peroxiredoxin [Globodera rostochiensis];CAB48391.1 peroxiredoxin [Globodera rostochiensis]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0016209|GO:0016491
|
GO:0008150_0.858|GO:0009987_0.784|GO:0005575_0.780|GO:0110165_0.774|GO:0003674_0.746|GO:0050896_0.688|GO:0005622_0.659|GO:0005737_0.659|GO:0016020_0.622|GO:0051716_0.563|GO:0042221_0.551|GO:0043226_0.532|GO:0006950_0.527|GO:0043227_0.517
|
IPR000866+9-71+|IPR013766+7-153+|IPR036249+8-71+|IPR050217+3-71+
|
— |
PF00578+9-71+AhpC/TSA_family
|
— |
PTHR10681+3-71+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-153
|
7kj1_J
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.939
|
17116.770
|
9.129
|
4.500
|
17.647
|
16.993
|
39.869
|
60.131
|
10.458
|
7.190
|
53.595
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkred
|
brown
|
106.609
|
9.809
|
36.327
|
33.699
|
48.644
|
61.804
|
664.673
|
291.866
|
47.731
|
0.560
|
20.776
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.658
|
1.643
|
— | — | — |
3.439
|
2.135
|
1.331
|
— | — | — | — | — |
No JSON data available for plots.