Hg_chrom5_TN10mRNA_9119
Organism: Heterodera glycines Gene Locus: chr5:1429537-1431790 Feature type: polypeptideProtein Sequence
Length: 464
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.677 | 1.854 | 0.705 | 0.52 | 1.688 | 1.492 | 0.924 | 1.293 | 1.916 | 1.165 | 1.11 | 1.775 | 1.557 | 0.58 | 0.66 | 0.708 | 0.671 | 0.522 | 0.332 | 0.634 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_8575
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
6-Not_Clustered
|
0.818
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal|nuclear_export_signal
|
cytoplasm|nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.617
|
0.177
|
0.035
|
0.614
|
0.074
|
0.174
|
0.211
|
0.057
|
0.108
|
0.268
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0002154
|
3.000
|
1.000
|
Hsc_gene_1676.t1
|
— | — | — |
KAI3410492.1 hypothetical protein GPALN_004593 [Globodera pallida]
|
KAI5070811
|
0.210
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.943|GO:0003674_0.860|GO:0008152_0.813|GO:0044238_0.787|GO:0043170_0.768|GO:0003824_0.752|GO:0019538_0.735|GO:0043412_0.695|GO:0016740_0.693|GO:0036211_0.692|GO:0140096_0.683|GO:0043687_0.678|GO:0070647_0.678|GO:0016567_0.677|GO:0032446_0.677|GO:0016746_0.663|GO:0016755_0.657|GO:0019787_0.657|GO:0004842_0.656
|
IPR001841+250-301_252-301+|IPR013083+225-306+
|
— |
PF13639+250-301+Ring_finger_domain
|
— | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-464
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.505
|
52470.580
|
5.178
|
-10.000
|
27.155
|
10.776
|
50.000
|
50.000
|
13.147
|
14.009
|
42.457
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
grey
|
819.317
|
0.000
|
2.718
|
47.564
|
26.156
|
117.205
|
9.529
|
6.744
|
24.878
|
3487.136
|
2003.311
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
5.771
|
10.000
|
4.221
|
-0.896
|
2.180
|
-3.612
|
-4.225
|
— | — | — |
-3.617
|
— | — |
No JSON data available for plots.