Hg_chrom5_TN10mRNA_9122
Organism: Heterodera glycines Gene Locus: chr5:1451057-1452903 Feature type: polypeptideProtein Sequence
Length: 274
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.679 | 1.103 | 0.929 | 0.126 | 0.912 | 1.029 | 0.608 | 1.642 | 1.217 | 1.677 | 1.272 | 1.073 | 2.129 | 0.842 | 1.043 | 0.834 | 0.897 | 0.774 | 1.684 | 0.644 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_8578
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
9-Migratory
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
mitochondrial_transit_peptide
|
mitochondrion
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.211
|
0.891
|
0.085
|
0.342
|
0.207
|
0.091
|
0.143
|
0.055
|
0.055
|
0.102
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0009137
|
1.000
|
1.000
|
Hsc_gene_12375.t1
|
— | — |
Q95RI5.1 Failed axon connections [Drosophila melanogaster]
|
KAI1729662.1 outer mitochondrial membrane transport complex protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.886|GO:0110165_0.884|GO:0005622_0.858|GO:0005737_0.818|GO:0016020_0.772|GO:0008150_0.662|GO:0043226_0.612|GO:0009987_0.601|GO:0043229_0.597|GO:0043227_0.574|GO:0043231_0.564
|
IPR012336+33-124+|IPR026928+16-256+|IPR033468+182-246+|IPR036249+30-116+|IPR036282+176-259+|IPR050931+10-258+
|
— |
PF17171+182-246+Glutathione_S-transferase,_C-terminal_domain|PF17172+33-124+Glutathione_S-transferase_N-terminal_domain
|
— |
PTHR12289+10-258+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
274-274
|
1.000
|
1-273
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.797
|
31717.700
|
10.019
|
12.500
|
27.372
|
15.328
|
47.445
|
52.555
|
16.788
|
10.584
|
41.971
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
grey
|
1128.508
|
454.486
|
4353.895
|
1053.069
|
444.827
|
374.262
|
120.428
|
4803.926
|
145.798
|
476.038
|
334.507
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
3.033
|
1.075
|
-1.941
|
-1.275
|
— |
-1.628
|
3.586
|
-5.181
|
— |
2.987
|
— | — | — |
No JSON data available for plots.