SCN Proteipedia

Hg_chrom5_TN10mRNA_9123

Organism: Heterodera glycines Gene Locus: chr5:1453815-1455762 Feature type: polypeptide

Protein Sequence

Length: 226

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.875	0.617	0.322	0.61	0.442	0.908	0.79	1.549	2.163	1.854	0.603	1.822	2.704	0.851	0.722	1.264	0.725	0.805	0.681	0.781	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom5_TN10gene_8579	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	15-Not_Clustered	0.520

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	transmembrane_domain	lysosome_vacuole	—	—	91-119	0.997	—	—	—	—	0.001	—	—	0.064	0.159	0.062	0.173	0.288	0.469	0.408	0.095	0.216	0.107

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	—	—	—	—	—	—	Q758C3.1 Protein BTN1 [Eremothecium gossypii ATCC 10895]	KAF7632702.1 Battenin [Meloidogyne graminicola]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0016020	GO:0008150_0.939\|GO:0005575_0.915\|GO:0110165_0.914\|GO:0016020_0.894\|GO:0009987_0.886\|GO:0051179_0.855\|GO:0071944_0.851\|GO:0006810_0.848\|GO:0051234_0.848\|GO:0005886_0.844\|GO:0003674_0.834\|GO:0055085_0.818\|GO:0005622_0.795\|GO:0005737_0.795\|GO:0043226_0.785\|GO:0065007_0.779\|GO:0043227_0.773\|GO:0050896_0.773\|GO:0043229_0.772\|GO:0005215_0.759\|GO:0043231_0.757\|GO:0050789_0.756\|GO:0005773_0.754\|GO:0051716_0.746\|GO:0008152_0.741\|GO:0050794_0.740\|GO:0071705_0.737\|GO:0009058_0.727\|GO:0044237_0.727\|GO:0044238_0.724\|GO:0065008_0.713\|GO:0044249_0.709\|GO:0005488_0.707\|GO:0071840_0.707\|GO:0016043_0.706\|GO:0051641_0.704\|GO:0042592_0.702\|GO:0012505_0.700\|GO:0019538_0.700\|GO:0043170_0.700\|GO:0048878_0.698\|GO:0048519_0.696\|GO:0019725_0.694\|GO:0051649_0.694\|GO:0009059_0.693\|GO:0061024_0.691\|GO:0055082_0.690\|GO:0006793_0.689\|GO:0006796_0.689\|GO:0048523_0.689\|GO:0006865_0.688\|GO:0033036_0.688\|GO:0019222_0.687\|GO:0006996_0.686\|GO:0031323_0.686\|GO:0050801_0.685\|GO:0006873_0.684\|GO:0010467_0.684\|GO:0030003_0.684\|GO:0055080_0.684\|GO:0016192_0.683\|GO:0098657_0.683\|GO:0080090_0.682\|GO:0016050_0.681\|GO:0060255_0.681\|GO:0051604_0.680\|GO:0008219_0.679\|GO:0009889_0.679\|GO:0031326_0.679\|GO:0012501_0.677\|GO:0051128_0.677\|GO:0051246_0.677\|GO:0006508_0.676\|GO:0006915_0.676\|GO:0042981_0.676\|GO:0043066_0.676\|GO:0043067_0.676\|GO:0043069_0.676\|GO:0048193_0.676\|GO:0007033_0.675\|GO:0048870_0.675\|GO:0006900_0.674\|GO:0010324_0.674\|GO:0016477_0.674\|GO:0016485_0.674\|GO:0006897_0.673\|GO:0006892_0.670\|GO:0007010_0.670\|GO:0007040_0.670\|GO:0030162_0.670\|GO:0033043_0.670\|GO:0051640_0.670\|GO:0080171_0.670\|GO:0031984_0.602\|GO:0031982_0.600\|GO:0030054_0.586\|GO:0000323_0.585\|GO:0005794_0.580\|GO:0098590_0.580\|GO:0031410_0.578\|GO:0097708_0.578\|GO:0045202_0.570\|GO:0042995_0.566\|GO:0005764_0.564\|GO:0120025_0.563\|GO:0043005_0.557\|GO:0005768_0.556\|GO:0098791_0.555\|GO:0098857_0.555\|GO:0005802_0.554\|GO:0045121_0.554\|GO:0005769_0.545\|GO:0005770_0.545\|GO:0022857_0.439\|GO:0031090_0.429\|GO:0006811_0.400\|GO:0034220_0.400\|GO:0032501_0.398\|GO:0042221_0.395\|GO:0006950_0.379\|GO:0015711_0.379\|GO:0015075_0.373\|GO:0023052_0.373\|GO:0007154_0.372\|GO:0005783_0.370\|GO:0009628_0.369\|GO:0015849_0.369\|GO:0046942_0.369\|GO:1903825_0.368\|GO:0006629_0.366\|GO:0070887_0.366\|GO:1905039_0.366\|GO:0007165_0.365\|GO:0008610_0.363\|GO:0003333_0.362\|GO:0019637_0.362\|GO:0048583_0.361\|GO:0005515_0.360\|GO:0044281_0.360\|GO:0090407_0.360\|GO:0033554_0.359\|GO:0042886_0.359\|GO:0044255_0.359\|GO:0010876_0.357\|GO:0098588_0.357\|GO:0015695_0.356\|GO:0046486_0.356\|GO:0048518_0.356\|GO:0003008_0.355\|GO:0006644_0.355\|GO:0008654_0.355\|GO:0006650_0.354\|GO:0006869_0.354\|GO:0046907_0.354\|GO:0015807_0.353\|GO:0032879_0.352\|GO:0045017_0.352\|GO:0046474_0.352\|GO:0071214_0.352\|GO:0104004_0.352\|GO:1902475_0.352\|GO:0010646_0.351\|GO:0051049_0.351\|GO:1901264_0.351	IPR003492+44-220_45-220_59-81_103-118_130-142_153-177_189-218+	—	PF02487+44-220+CLN3_protein	—	PTHR10981+45-220+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	—	—	1.000	1-226	—	—

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.855	25221.000	9.671	10.500	15.044	16.372	34.513	65.487	10.619	4.425	43.363

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	turquoise	red	496.322	126.337	168.113	117.562	170.106	204.227	177.664	246.424	40.115	1687.408	981.425

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	—	—	-0.405	0.500	0.279	—	—	—	—	—	—	—	-5.367

No JSON data available for plots.

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