Hg_chrom5_TN10mRNA_9124
Organism: Heterodera glycines Gene Locus: chr5:1457153-1458903 Feature type: polypeptideProtein Sequence
Length: 212
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.371 | 1.426 | 0.257 | 0.813 | 0.393 | 0.605 | 0.955 | 0.236 | 1.468 | 1.594 | 0.357 | 2.497 | 2.227 | 0.816 | 0.481 | 1.55 | 1.083 | 0.715 | 0.726 | 0.694 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_8580
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
24-J3_Female
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide|transmembrane_domain
|
cell_membrane
|
— | — | — | — |
72-112
|
0.991
|
— | — |
0.000
|
— | — |
0.101
|
0.082
|
0.028
|
0.082
|
0.481
|
0.290
|
0.280
|
0.136
|
0.648
|
0.125
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001693
|
3.000
|
1.000
|
Hsc_gene_7861.t1
|
— | — |
Q61124.2 Battenin [Mus musculus]
|
KAF7632702.1 Battenin [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0016020
|
GO:0005575_0.905|GO:0110165_0.903|GO:0016020_0.866|GO:0008150_0.823|GO:0009987_0.758|GO:0005622_0.749|GO:0005737_0.749|GO:0043226_0.730|GO:0043229_0.721|GO:0043227_0.718|GO:0071944_0.715|GO:0051179_0.711|GO:0043231_0.710|GO:0006810_0.706|GO:0051234_0.706|GO:0005886_0.698|GO:0005773_0.689|GO:0065007_0.676|GO:0055085_0.659|GO:0071705_0.625|GO:0065008_0.594|GO:0042592_0.591|GO:0048878_0.584|GO:0019725_0.580|GO:0000323_0.577|GO:0055082_0.577|GO:0006865_0.573|GO:0006873_0.572|GO:0030003_0.572|GO:0050801_0.572|GO:0055080_0.572|GO:0003674_0.570|GO:0012505_0.533|GO:0050896_0.525|GO:0050789_0.514
|
IPR003492+7-211_21-211_22-44_83-99_137-159_167-187+
|
— |
PF02487+21-211+CLN3_protein
|
— |
PTHR10981+7-211+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-212
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.910
|
22522.260
|
8.008
|
2.500
|
8.962
|
11.792
|
34.906
|
65.094
|
5.189
|
3.774
|
56.132
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
white
|
13.952
|
2.708
|
4.355
|
14.899
|
38.324
|
38.874
|
59.486
|
4.123
|
0.000
|
0.000
|
0.000
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
2.327
|
1.865
|
1.331
|
— | — |
-3.348
|
3.988
|
— |
4.755
|
— | — | — |
No JSON data available for plots.