Hg_chrom5_TN10mRNA_9127
Organism: Heterodera glycines Gene Locus: chr5:1463518-1467732 Feature type: polypeptideProtein Sequence
Length: 571
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.977 | 0.611 | 1.21 | 0.664 | 1.372 | 0.943 | 0.792 | 2.014 | 1.362 | 1.112 | 0.929 | 1.751 | 1.557 | 0.977 | 1.108 | 0.826 | 0.746 | 0.584 | 1.347 | 0.67 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_8582
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
15-Not_Clustered
|
0.895
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— |
KKKK,PQHKRPK
|
— | — | — | — | — | — |
0.000
|
— | — |
0.384
|
0.333
|
0.012
|
0.652
|
0.283
|
0.188
|
0.185
|
0.057
|
0.136
|
0.087
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003868
|
2.000
|
1.000
|
Hsc_gene_24380.t1
|
— | — |
Q54MB4.1 Probable asparagine synthetase [glutamine-hydrolyzing] [Dictyostelium discoideum]
|
KAH7716467.1 Protein ASNS-2 c [Aphelenchus avenae]
|
No
|
0.030
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004066|GO:0006529
|
GO:0005575_0.835|GO:0110165_0.835|GO:0008150_0.834|GO:0005622_0.765|GO:0005737_0.709|GO:0009987_0.706|GO:0008152_0.700|GO:0044238_0.601|GO:0044237_0.589|GO:0009058_0.581|GO:0003674_0.565|GO:0044249_0.558|GO:0044281_0.518
|
IPR001962+215-359_216-460+|IPR006426+1-359_2-369_356-545+|IPR014729+204-518+|IPR017932+2-191_50-171+|IPR029055+1-196_3-197+|IPR033738+2-197+|IPR050795+1-543+
|
— |
PF00733+215-359+Asparagine_synthase|PF13537+50-171+Glutamine_amidotransferase_domain
|
G3DSA:3.40.50.620:FF:000031+198-518+Asparagine_synthase_B
|
PTHR11772+1-543+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
517-571
|
1.000
|
1-516
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.615
|
64760.580
|
5.939
|
-7.500
|
30.473
|
13.660
|
47.110
|
52.890
|
15.587
|
14.886
|
45.534
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
darkgrey
|
3841.253
|
1479.340
|
822.320
|
3086.049
|
3387.126
|
2849.156
|
2073.488
|
13245.821
|
1677.908
|
5443.314
|
3829.569
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.075
|
0.924
|
2.016
|
0.102
|
-0.234
|
-0.448
|
2.117
|
-2.534
|
— | — | — | — | — |
No JSON data available for plots.