Hg_chrom5_TN10mRNA_9133
Organism: Heterodera glycines Gene Locus: chr5:1500674-1501563 Feature type: polypeptideProtein Sequence
Length: 87
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.668 | 0.535 | 0.418 | 0.0 | 0.0 | 1.474 | 0.547 | 1.149 | 0.255 | 2.019 | 0.697 | 2.028 | 2.235 | 1.547 | 1.173 | 1.314 | 1.319 | 1.567 | 0.0 | 1.014 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_8587
|
— | — |
1.556
|
2.000
|
1.000
|
1.000
|
2.000
|
2.000
|
2.000
|
1.000
|
2.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
24-J3_Female
|
0.998
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
mitochondrion
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.260
|
0.676
|
0.460
|
0.080
|
0.393
|
0.079
|
0.030
|
0.039
|
0.051
|
0.024
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
Q8MZC4.1 Probable cardiolipin synthase (CMP-forming) [Drosophila melanogaster]
|
XP_024501271.1 Cardiolipin synthase [Strongyloides ratti];CEF62069.1 Cardiolipin synthase [Strongyloides ratti]
|
No
|
0.030
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.819|GO:0005575_0.749|GO:0110165_0.743|GO:0003674_0.672|GO:0016020_0.664|GO:0009987_0.662|GO:0005622_0.637|GO:0043226_0.611|GO:0043229_0.603|GO:0005737_0.583|GO:0043227_0.579|GO:0043231_0.562|GO:0003824_0.557|GO:0016740_0.549|GO:0016772_0.549|GO:0016780_0.549|GO:0030572_0.549|GO:0043337_0.549
|
— | — | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-87
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.627
|
9742.520
|
11.243
|
8.000
|
14.943
|
13.793
|
40.230
|
59.770
|
12.644
|
2.299
|
50.575
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
red
|
grey
|
381.832
|
54.314
|
89.153
|
99.198
|
139.807
|
105.975
|
269.220
|
90.038
|
148.759
|
1241.055
|
772.928
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.484
|
0.731
|
0.264
|
0.463
|
-0.386
|
1.357
|
— |
1.724
|
-3.131
|
— |
-2.809
|
— | — |
No JSON data available for plots.