Hg_chrom5_TN10mRNA_9134
Organism: Heterodera glycines Gene Locus: chr5:1503824-1508054 Feature type: polypeptideProtein Sequence
Length: 202
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.979 | 1.151 | 0.72 | 0.854 | 0.743 | 0.508 | 0.825 | 0.99 | 1.54 | 1.405 | 0.375 | 2.038 | 1.925 | 1.618 | 0.909 | 1.273 | 1.217 | 0.375 | 0.762 | 0.582 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_8588
|
— | — |
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
24-J3_Female
|
0.999
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
mitochondrial_transit_peptide
|
mitochondrion
|
— |
PKPS
|
8-29
|
0.819
|
24-51
|
0.991
|
— | — |
0.000
|
— | — |
0.107
|
0.872
|
0.113
|
0.095
|
0.158
|
0.053
|
0.102
|
0.020
|
0.115
|
0.036
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000582
|
5.000
|
2.000
|
Hsc_gene_9097.t1;Hsc_gene_9097.t2
|
— | — |
O01916.1 Probable cardiolipin synthase (CMP-forming) [Caenorhabditis elegans]
|
XP_024501271.1 Cardiolipin synthase [Strongyloides ratti];CEF62069.1 Cardiolipin synthase [Strongyloides ratti]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0008654|GO:0016020|GO:0016780
|
GO:0008150_0.802|GO:0005575_0.784|GO:0110165_0.784|GO:0003674_0.773|GO:0016020_0.692|GO:0009987_0.664|GO:0003824_0.640|GO:0005622_0.632|GO:0016740_0.610|GO:0005737_0.606|GO:0016772_0.588|GO:0016780_0.581|GO:0043226_0.575|GO:0043227_0.570|GO:0043229_0.565|GO:0043231_0.560
|
IPR000462+98-181+|IPR043130+93-193+|IPR050324+81-181+
|
— |
PF01066+98-181+CDP-alcohol_phosphatidyltransferase
|
— |
PTHR14269+81-181+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
46-89
|
2.000
|
1-45;90-202
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.815
|
22067.370
|
6.076
|
-1.000
|
17.327
|
11.881
|
40.594
|
59.406
|
8.911
|
8.416
|
53.960
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
turquoise
|
102.980
|
29.977
|
55.282
|
52.223
|
76.257
|
57.054
|
135.373
|
37.300
|
1.205
|
283.336
|
162.423
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.651
|
0.664
|
— |
0.516
|
— |
1.256
|
-0.722
|
2.001
|
-5.126
|
5.582
|
— | — | — |
No JSON data available for plots.