Hg_chrom5_TN10mRNA_9137
Organism: Heterodera glycines Gene Locus: chr5:1526892-1539086 Feature type: polypeptideProtein Sequence
Length: 1,121
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.245 | 1.348 | 0.681 | 0.523 | 1.056 | 2.013 | 0.733 | 0.803 | 0.595 | 0.904 | 0.892 | 0.892 | 0.595 | 1.269 | 1.165 | 1.351 | 1.272 | 0.824 | 0.686 | 0.446 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_8591
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
14-Not_described
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
KREDGGVTRRRKRGN,RRRPPVMCQPCELYARKQK,RRPPVMCQPCELYARKQKK
|
— | — | — | — | — | — |
0.000
|
— | — |
0.911
|
0.094
|
0.017
|
0.233
|
0.034
|
0.013
|
0.025
|
0.007
|
0.074
|
0.049
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004011
|
1.000
|
2.000
|
Hsc_gene_24985.t1;Hsc_gene_24985.t2
|
Hsc_gene_24985.t2
|
— | — |
KAI3417803.1 hypothetical protein GPALN_012078 [Globodera pallida]
|
No
|
-0.310
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — |
IPR000949+531-647+|IPR001005+655-704_658-702+|IPR009057+652-702+|IPR017884+654-706+|IPR051066+34-993+
|
SM00717+655-704+
|
PF00249+658-702+Myb-like_DNA-binding_domain
|
— |
PTHR16089+34-993+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-384;425-578;787-934;983-1121
|
3.000
|
385-424;579-786;935-982
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.908
|
121395.140
|
9.070
|
26.000
|
23.283
|
6.155
|
54.148
|
45.852
|
13.202
|
10.080
|
57.181
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkgrey
|
blue
|
1975.652
|
1293.005
|
843.145
|
787.888
|
759.451
|
753.486
|
857.728
|
434.466
|
1982.993
|
5007.793
|
3711.450
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.846
|
-0.852
|
— | — | — |
0.197
|
-0.901
|
1.124
|
— | — | — | — | — |
No JSON data available for plots.