Hg_chrom5_TN10mRNA_9139
Organism: Heterodera glycines Gene Locus: chr5:1546382-1551469 Feature type: polypeptideProtein Sequence
Length: 523
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.823 | 0.934 | 0.73 | 0.791 | 1.179 | 1.569 | 0.66 | 1.243 | 1.36 | 1.524 | 0.811 | 2.025 | 1.593 | 0.588 | 1.288 | 0.738 | 0.846 | 0.782 | 1.471 | 0.787 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_8593
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
9-Not_Clustered
|
0.676
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide|transmembrane_domain
|
endoplasmic_reticulum
|
— |
RKQLMDELKARKKLRE
|
15-38
|
0.996
|
— | — | — | — |
0.000
|
— | — |
0.106
|
0.320
|
0.020
|
0.114
|
0.876
|
0.122
|
0.100
|
0.003
|
0.149
|
0.121
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004012
|
2.000
|
1.000
|
Hsc_gene_22507.t1
|
Hsc_gene_13007.t1;Hsc_gene_22504.t1;Hsc_gene_22507.t1;Hsc_gene_5173.t1;Hsc_gene_5173.t2
|
— |
Q27514.1 Putative cytochrome P450 CYP13A5 [Caenorhabditis elegans]
|
KAI1706016.1 cytochrome p450 domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004497|GO:0005506|GO:0016705|GO:0020037
|
GO:0008150_0.851|GO:0003674_0.621|GO:0005575_0.558|GO:0009987_0.557|GO:0110165_0.557|GO:0008152_0.535
|
IPR001128+38-497_338-355_390-401_464-473_473-484+|IPR002401+64-83_88-109_327-344_347-373_389-407_431-455_463-473_473-496+|IPR017972+466-475+|IPR036396+19-517_37-504+|IPR050476+15-508+
|
— |
PF00067+38-497+Cytochrome_P450
|
G3DSA:1.10.630.10:FF:000182+17-511+Cytochrome_P450_3A4
|
PTHR24292+15-508+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-523
|
3cbd_B
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.577
|
60288.760
|
7.940
|
9.500
|
25.239
|
12.811
|
45.698
|
54.302
|
14.149
|
11.090
|
41.491
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
cyan
|
grey
|
355.020
|
255.804
|
316.591
|
257.122
|
125.399
|
41.789
|
240.525
|
1758.284
|
458.310
|
86.162
|
245.654
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — |
-1.067
|
-1.571
|
2.537
|
5.299
|
-2.728
|
— | — | — | — | — |
No JSON data available for plots.