Hg_chrom5_TN10mRNA_9140
Organism: Heterodera glycines Gene Locus: chr5:1552834-1558278 Feature type: polypeptideProtein Sequence
Length: 540
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.754 | 0.818 | 0.774 | 0.702 | 1.265 | 1.519 | 0.617 | 1.204 | 1.276 | 1.476 | 0.842 | 1.852 | 1.698 | 0.641 | 1.285 | 0.82 | 1.002 | 0.814 | 1.425 | 0.708 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_8594
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
15-Not_Clustered
|
0.487
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide|transmembrane_domain
|
endoplasmic_reticulum
|
— |
RKQLMDELKARKKLRE
|
14-34
|
0.995
|
— | — | — | — |
0.000
|
— | — |
0.098
|
0.313
|
0.022
|
0.113
|
0.880
|
0.134
|
0.110
|
0.003
|
0.156
|
0.127
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004012
|
2.000
|
1.000
|
Hsc_gene_22507.t1
|
Hsc_gene_5173.t1;Hsc_gene_5173.t2
|
— |
Q27516.2 Putative cytochrome P450 CYP13A8 [Caenorhabditis elegans]
|
KAI1706016.1 cytochrome p450 domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004497|GO:0005506|GO:0016705|GO:0020037
|
GO:0008150_0.873|GO:0003674_0.598|GO:0009987_0.565|GO:0005575_0.564|GO:0110165_0.564|GO:0008152_0.537|GO:0050896_0.501
|
IPR001128+36-522_342-359_395-406_469-478_478-489+|IPR002401+64-83_88-109_331-348_351-377_394-412_436-460_468-478_478-501+|IPR017972+471-480+|IPR036396+19-538_35-531+|IPR050476+15-523+
|
— |
PF00067+36-522+Cytochrome_P450
|
G3DSA:1.10.630.10:FF:000182+17-540+Cytochrome_P450_3A4
|
PTHR24292+15-523+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-540
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.533
|
62298.820
|
7.435
|
6.500
|
26.111
|
12.778
|
47.407
|
52.593
|
14.259
|
11.852
|
42.037
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
cyan
|
yellowgreen
|
378.754
|
226.328
|
250.863
|
262.862
|
215.816
|
83.618
|
305.781
|
1440.498
|
547.213
|
201.977
|
349.935
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — |
-0.317
|
-1.355
|
1.885
|
4.000
|
-2.091
|
— | — | — | — | — |
No JSON data available for plots.