Hg_chrom5_TN10mRNA_9141
Organism: Heterodera glycines Gene Locus: chr5:1561309-1565918 Feature type: polypeptideProtein Sequence
Length: 486
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.981 | 1.196 | 0.898 | 0.639 | 0.995 | 1.266 | 0.612 | 2.058 | 1.006 | 1.362 | 0.748 | 1.452 | 2.0 | 0.791 | 1.134 | 0.823 | 0.776 | 1.154 | 0.95 | 0.363 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_8595
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
25-Eggs_Female
|
0.999
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide|transmembrane_domain
|
endoplasmic_reticulum
|
— | — |
9-29
|
0.989
|
— | — | — | — |
0.000
|
— | — |
0.108
|
0.264
|
0.019
|
0.174
|
0.778
|
0.120
|
0.225
|
0.015
|
0.185
|
0.125
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0009140
|
1.000
|
1.000
|
Hsc_gene_22508.t1
|
Hsc_gene_22515.t1;Hsc_gene_22516.t1
|
— |
Q27513.1 Putative cytochrome P450 CYP13A4 [Caenorhabditis elegans]
|
KAI3419701.1 Thromboxane-A synthase [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004497|GO:0005506|GO:0016705|GO:0020037
|
GO:0008150_0.873|GO:0003674_0.796|GO:0008152_0.689|GO:0003824_0.673|GO:0005575_0.672|GO:0110165_0.672|GO:0016491_0.592|GO:0009987_0.590|GO:0005622_0.579|GO:0016020_0.570|GO:0044238_0.501
|
IPR001128+38-464+|IPR002401+75-96_296-322_334-352_430-453+|IPR036396+28-485_38-481+|IPR050121+3-457+
|
— |
PF00067+38-464+Cytochrome_P450
|
— |
PTHR24305+3-457+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-486
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.596
|
54987.060
|
7.276
|
8.000
|
25.514
|
13.786
|
46.091
|
53.909
|
14.609
|
10.905
|
47.737
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
66.213
|
219.314
|
269.556
|
45.148
|
27.143
|
22.276
|
74.861
|
12.377
|
2.764
|
36.105
|
21.816
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
-2.418
|
-2.466
|
-0.767
|
— |
1.758
|
-0.954
|
2.738
|
— |
4.329
|
— | — | — |
No JSON data available for plots.