Hg_chrom5_TN10mRNA_9142
Organism: Heterodera glycines Gene Locus: chr5:1568718-1578029 Feature type: polypeptideProtein Sequence
Length: 808
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.878 | 1.698 | 0.99 | 0.683 | 1.134 | 1.618 | 0.707 | 1.3 | 0.825 | 1.037 | 0.863 | 1.383 | 0.997 | 1.19 | 1.187 | 1.344 | 0.954 | 0.506 | 0.762 | 0.437 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_8596
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
17-Not_Clustered
|
0.938
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— |
RRRSSLFCTAVDPAMKRLR,RRSSLFCTAVDPAMKRLRQ
|
52-87
|
0.958
|
41-61
|
0.999
|
— | — |
0.000
|
— | — |
0.303
|
0.143
|
0.006
|
0.774
|
0.124
|
0.158
|
0.120
|
0.158
|
0.188
|
0.063
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0009141
|
1.000
|
1.000
|
Hsc_gene_22509.t1
|
Hsc_gene_22509.t1
|
— |
Q9C9N3.1 Zinc finger CCCH domain-containing protein 14 [Arabidopsis thaliana]
|
KAI1728182.1 zinc finger c-x8-C-x5-C-x3-H type (and similar) domain-containing protein [Ditylenchus destructor]
|
No
|
-0.040
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003729|GO:0046872
|
GO:0008150_0.959|GO:0009987_0.841|GO:0065007_0.828|GO:0050789_0.817|GO:0050794_0.809|GO:0003674_0.806|GO:0005488_0.776|GO:0005575_0.765|GO:0110165_0.765|GO:0008152_0.746|GO:0043170_0.746|GO:0044238_0.732|GO:0019222_0.726|GO:0031323_0.726|GO:0044237_0.726|GO:0009058_0.725|GO:0009059_0.725|GO:0044249_0.725|GO:0010467_0.719|GO:0080090_0.717|GO:0060255_0.712|GO:0005622_0.708|GO:0009889_0.702|GO:0010468_0.702|GO:0010556_0.702|GO:0031326_0.702|GO:0032502_0.694|GO:0048856_0.694|GO:0097159_0.672|GO:0003676_0.667|GO:0048518_0.643|GO:0048519_0.643|GO:0048523_0.625|GO:0003723_0.624|GO:0032501_0.614|GO:0043226_0.608|GO:0043229_0.588|GO:0007275_0.587|GO:0006139_0.548|GO:0009893_0.546|GO:0003729_0.540|GO:0010604_0.540|GO:0090304_0.539|GO:0016070_0.537|GO:0005737_0.531|GO:0009892_0.525|GO:0031324_0.521|GO:0010605_0.520|GO:0019219_0.514|GO:0051252_0.514|GO:0009890_0.513|GO:0030154_0.513|GO:0048869_0.513|GO:0010558_0.512|GO:0031327_0.512
|
IPR000571+102-129_102-130_103-129_143-170_143-171_145-170+|IPR036855+100-134_141-171+|IPR045877+68-288+
|
SM00356+102-129_143-170+
|
PF00642+103-129_145-170+Zinc_finger_C-x8-C-x5-C-x3-H_type_(and_similar)
|
G3DSA:4.10.1000.10:FF:000001+97-135+zinc_finger_CCCH_domain-containing_protein_15-like|G3DSA:4.10.1000.10:FF:000018+138-173+Zinc_finger_protein
|
PTHR12547+68-288+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-13;314-808
|
1.000
|
14-313
|
6nzl_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.840
|
89812.920
|
6.857
|
4.500
|
26.361
|
8.663
|
55.198
|
44.802
|
14.109
|
12.252
|
52.970
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
darkgreen
|
1089.170
|
117.687
|
1146.620
|
374.745
|
66.962
|
28.648
|
98.304
|
101.094
|
4519.057
|
650.552
|
2308.483
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
3.055
|
1.532
|
-1.505
|
-2.516
|
-1.210
|
1.790
|
1.727
|
— |
2.706
|
-3.409
|
— | — | — |
No JSON data available for plots.