Hg_chrom5_TN10mRNA_9145
Organism: Heterodera glycines Gene Locus: chr5:1596714-1598085 Feature type: polypeptideProtein Sequence
Length: 329
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.884 | 0.919 | 0.663 | 0.943 | 0.912 | 0.935 | 0.724 | 1.216 | 1.486 | 1.027 | 0.553 | 1.609 | 1.604 | 1.227 | 1.861 | 1.086 | 1.096 | 0.737 | 1.169 | 0.536 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_8599
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.435
|
0.416
|
0.037
|
0.382
|
0.192
|
0.018
|
0.269
|
0.263
|
0.149
|
0.254
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0002090
|
3.000
|
1.000
|
Hsc_gene_13037.t1
|
— | — | — |
CDJ95294.1 Oxysterol-binding protein domain containing protein [Haemonchus contortus]
|
No
|
-0.200
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0008289
|
GO:0008150_0.889|GO:0009987_0.773|GO:0005575_0.764|GO:0110165_0.763|GO:0005622_0.661|GO:0016020_0.645|GO:0043226_0.594|GO:0043229_0.580|GO:0043227_0.558|GO:0043231_0.543|GO:0005737_0.535
|
IPR000648+30-237_58-242+|IPR037239+3-237+
|
— |
PF01237+58-242+Oxysterol-binding_protein
|
— |
PTHR10972+30-237+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-329
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.864
|
37143.720
|
9.684
|
16.000
|
24.316
|
11.550
|
46.201
|
53.799
|
15.198
|
9.119
|
49.544
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
grey
|
4.858
|
3.514
|
3.581
|
6.834
|
4.870
|
5.242
|
1.216
|
2.225
|
12.387
|
1.656
|
6.255
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — |
-2.103
|
— | — | — | — | — | — | — |
No JSON data available for plots.