Hg_chrom5_TN10mRNA_9153
Organism: Heterodera glycines Gene Locus: chr5:1653309-1654454 Feature type: polypeptideProtein Sequence
Length: 204
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.741 | 1.596 | 0.891 | 0.676 | 0.817 | 0.628 | 0.408 | 1.716 | 1.525 | 1.259 | 0.891 | 2.307 | 1.225 | 1.414 | 1.0 | 1.331 | 0.804 | 0.668 | 1.131 | 0.865 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_8607
|
— | — |
1.556
|
3.000
|
1.000
|
2.000
|
2.000
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
22-J4_Male
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— | — | — | — |
11-61
|
0.998
|
— | — |
0.000
|
— | — |
0.337
|
0.215
|
0.131
|
0.495
|
0.267
|
0.207
|
0.250
|
0.029
|
0.141
|
0.459
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000313
|
7.000
|
2.000
|
Hsc_gene_17414.t1;Hsc_gene_23528.t1
|
— | — |
P70711.1 Ubiquitin-conjugating enzyme E2 D2B [Rattus norvegicus]
|
XP_056152579.1 ubiquitin-conjugating enzyme E2 D1 [Lampris incognitus]
|
No
|
-0.090
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.855|GO:0003674_0.785|GO:0008152_0.692|GO:0003824_0.689|GO:0044238_0.680|GO:0043170_0.660|GO:0016740_0.636|GO:0140096_0.626|GO:0019538_0.623|GO:0016746_0.612|GO:0016755_0.606|GO:0019787_0.606|GO:0004842_0.604|GO:0005575_0.522|GO:0110165_0.513
|
IPR000608+54-203_57-198_58-197+|IPR016135+45-204_46-203+|IPR023313+129-144+|IPR050113+55-202+
|
SM00212+57-203+
|
PF00179+58-197+Ubiquitin-conjugating_enzyme
|
G3DSA:3.10.110.10:FF:000101+52-203+Ubiquitin-conjugating_enzyme_E2_D2
|
PTHR24067+55-202+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
197-204
|
1.000
|
1-196
|
4qpl_D
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.870
|
23154.620
|
8.153
|
5.500
|
24.020
|
12.255
|
47.549
|
52.451
|
14.216
|
9.804
|
49.510
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
black
|
2359.591
|
21.955
|
30.618
|
42.914
|
140.361
|
5859.220
|
56.205
|
8750.767
|
29.828
|
4712.574
|
2705.683
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
0.832
|
0.596
|
1.681
|
5.397
|
-6.694
|
— |
-7.136
|
-7.390
|
— |
-4.748
|
— | — |
No JSON data available for plots.