Hg_chrom5_TN10mRNA_9155
Organism: Heterodera glycines Gene Locus: chr5:1655754-1656898 Feature type: polypeptideProtein Sequence
Length: 151
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.77 | 0.924 | 1.325 | 0.457 | 0.993 | 0.679 | 0.552 | 1.656 | 1.472 | 1.253 | 0.702 | 1.948 | 0.736 | 1.401 | 1.622 | 0.757 | 1.086 | 0.602 | 1.528 | 1.363 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_8609
|
— | — |
2.444
|
3.000
|
2.000
|
2.000
|
2.000
|
3.000
|
2.000
|
2.000
|
3.000
|
3.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
22-J4_Male
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.322
|
0.177
|
0.009
|
0.650
|
0.128
|
0.134
|
0.232
|
0.034
|
0.140
|
0.106
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000313
|
7.000
|
2.000
|
Hsc_gene_17414.t1;Hsc_gene_23528.t1
|
— | — |
P35129.1 Ubiquitin-conjugating enzyme E2 2 [Caenorhabditis elegans]
|
KAI3421997.1 Ubiquitin-conjugating enzyme E2 D4 [Globodera pallida]
|
No
|
-0.030
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.852|GO:0003674_0.788|GO:0008152_0.698|GO:0003824_0.692|GO:0044238_0.683|GO:0043170_0.670|GO:0016740_0.646|GO:0140096_0.634|GO:0019538_0.633|GO:0016746_0.612|GO:0016755_0.607|GO:0019787_0.607|GO:0004842_0.605|GO:0005575_0.522|GO:0110165_0.510
|
IPR000608+1-150_4-145_5-144+|IPR016135+1-151_2-150+|IPR023313+77-92+|IPR050113+2-149+
|
SM00212+4-150+
|
PF00179+5-144+Ubiquitin-conjugating_enzyme
|
G3DSA:3.10.110.10:FF:000101+1-150+Ubiquitin-conjugating_enzyme_E2_D2
|
PTHR24067+2-149+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-151
|
1z2u_A
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.616
|
17448.900
|
6.968
|
1.500
|
29.139
|
12.583
|
47.682
|
52.318
|
15.894
|
13.245
|
47.020
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
black
|
1259.851
|
21.453
|
19.852
|
43.822
|
135.430
|
3630.517
|
62.992
|
4928.895
|
0.000
|
2195.739
|
1254.708
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
0.893
|
1.253
|
1.595
|
4.759
|
-5.840
|
— |
-6.145
|
-11.903
|
6.311
|
-3.633
|
— | — |
No JSON data available for plots.