Hg_chrom5_TN10mRNA_9156
Organism: Heterodera glycines Gene Locus: chr5:1657049-1658011 Feature type: polypeptideProtein Sequence
Length: 151
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.77 | 1.078 | 1.204 | 0.685 | 0.993 | 0.849 | 0.552 | 1.325 | 1.619 | 0.984 | 1.104 | 2.727 | 0.92 | 1.656 | 1.081 | 0.757 | 0.869 | 0.602 | 1.528 | 0.974 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_8610
|
— | — |
1.889
|
3.000
|
1.000
|
2.000
|
2.000
|
2.000
|
1.000
|
3.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
22-J4_Male
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.395
|
0.206
|
0.014
|
0.621
|
0.159
|
0.091
|
0.232
|
0.030
|
0.167
|
0.091
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000313
|
7.000
|
2.000
|
Hsc_gene_17414.t1;Hsc_gene_23528.t1
|
— | — |
P70711.1 Ubiquitin-conjugating enzyme E2 D2B [Rattus norvegicus]
|
XP_056152579.1 ubiquitin-conjugating enzyme E2 D1 [Lampris incognitus]
|
No
|
-0.020
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.872|GO:0003674_0.781|GO:0008152_0.717|GO:0044238_0.708|GO:0043170_0.692|GO:0003824_0.680|GO:0019538_0.649|GO:0016740_0.634|GO:0140096_0.624|GO:0016746_0.612|GO:0016755_0.607|GO:0019787_0.607|GO:0004842_0.605|GO:0005575_0.507
|
IPR000608+1-150_4-145_5-144+|IPR016135+1-151_2-150+|IPR023313+76-91+|IPR050113+2-149+
|
SM00212+4-150+
|
PF00179+5-144+Ubiquitin-conjugating_enzyme
|
G3DSA:3.10.110.10:FF:000101+1-150+Ubiquitin-conjugating_enzyme_E2_D2
|
PTHR24067+2-149+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
144-151
|
1.000
|
1-143
|
6d4p_A
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.726
|
17278.900
|
7.291
|
2.000
|
27.815
|
11.258
|
46.358
|
53.642
|
15.232
|
12.583
|
47.682
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
black
|
907.012
|
5.521
|
10.239
|
18.523
|
63.659
|
2613.420
|
38.408
|
5913.273
|
0.000
|
719.537
|
411.164
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
1.611
|
0.960
|
1.753
|
5.371
|
-6.072
|
1.065
|
-7.114
|
-10.291
|
5.068
|
— | — | — |
No JSON data available for plots.