SCN Proteipedia

Hg_chrom5_TN10mRNA_9161

Organism: Heterodera glycines Gene Locus: chr5:1691249-1699140 Feature type: polypeptide

Protein Sequence

Length: 575

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.768	2.305	0.506	0.66	0.696	3.122	0.663	2.957	0.734	1.034	0.685	1.023	0.773	1.137	0.674	1.839	0.627	0.369	0.268	0.665	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom5_TN10gene_8615	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	13-Not_described	1.000

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_export_signal	cytoplasm\|nucleus	—	—	—	—	—	—	—	—	0.000	—	—	0.556	0.181	0.011	0.742	0.106	0.061	0.071	0.085	0.195	0.034

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0009143	1.000	1.000	Hsc_gene_1303.t1	—	F38B7.1a;F38B7.1b	P26651.1 mRNA decay activator protein ZFP36 [Homo sapiens]	KAK5969678.1 Tristetraprolin [Trichostrongylus colubriformis];KAK5978193.1 Tristetraprolin [Trichostrongylus colubriformis]	No	0.040

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0003729\|GO:0046872	GO:0008150_0.923\|GO:0065007_0.870\|GO:0050789_0.868\|GO:0009987_0.867\|GO:0050794_0.867\|GO:0008152_0.802\|GO:0019222_0.802\|GO:0031323_0.802\|GO:0044237_0.802\|GO:0005575_0.795\|GO:0110165_0.795\|GO:0043170_0.791\|GO:0060255_0.791\|GO:0003674_0.783\|GO:0005488_0.783\|GO:0009058_0.772\|GO:0009889_0.772\|GO:0031326_0.770\|GO:0044249_0.770\|GO:0009059_0.768\|GO:0010556_0.768\|GO:0010467_0.767\|GO:0010468_0.764\|GO:0044238_0.761\|GO:0080090_0.761\|GO:0005622_0.754\|GO:0048519_0.742\|GO:0048523_0.724\|GO:0048518_0.719\|GO:0003676_0.690\|GO:0097159_0.690\|GO:0009893_0.686\|GO:0010604_0.679\|GO:0006139_0.675\|GO:0016070_0.675\|GO:0090304_0.675\|GO:0019219_0.625\|GO:0009892_0.624\|GO:0051252_0.622\|GO:0031324_0.616\|GO:0010605_0.613\|GO:0009890_0.604\|GO:0010558_0.604\|GO:0031327_0.604\|GO:0003723_0.591\|GO:0043226_0.583\|GO:0043229_0.583\|GO:0003729_0.577\|GO:0045935_0.576\|GO:0051254_0.574\|GO:0010629_0.566\|GO:0016020_0.534\|GO:0010608_0.525\|GO:0032502_0.520\|GO:0048856_0.520\|GO:0005737_0.519\|GO:0009056_0.504\|GO:0009057_0.504	IPR000571+62-89_62-90_63-89_100-127_100-128_101-126+\|IPR036855+62-93_97-128+\|IPR045877+25-448+	SM00356+62-89_100-127+	PF00642+63-89_101-126+Zinc_finger_C-x8-C-x5-C-x3-H_type_(and_similar)	G3DSA:4.10.1000.10:FF:000001+56-95+zinc_finger_CCCH_domain-containing_protein_15-like\|G3DSA:4.10.1000.10:FF:000002+96-131+Zinc_finger_protein_36,_C3H1_type-like_1	PTHR12547+25-448+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	1-67;260-575	1.000	68-259	1rgo_A	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.966	63702.770	8.316	22.000	20.696	11.304	59.478	40.522	13.739	6.957	51.826

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	black	orange	1694.247	1906.685	3155.916	1404.684	937.644	2351.355	418.720	2938.751	1065.793	1695.325	1425.526

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	0.498	-0.578	-1.060	-0.615	1.342	-2.482	—	-2.671	—	—	—	—	—

No JSON data available for plots.

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