Hg_chrom5_TN10mRNA_9162
Organism: Heterodera glycines Gene Locus: chr5:1703101-1706730 Feature type: polypeptideProtein Sequence
Length: 389
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.867 | 1.255 | 0.982 | 0.621 | 1.243 | 1.186 | 0.398 | 1.285 | 2.285 | 0.834 | 1.246 | 2.117 | 1.785 | 0.297 | 1.049 | 0.918 | 0.716 | 0.974 | 0.198 | 0.907 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_8616
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
15-Male
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm|cell_membrane
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.161
|
0.258
|
0.010
|
0.553
|
0.138
|
0.339
|
0.307
|
0.010
|
0.652
|
0.056
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0009144
|
1.000
|
1.000
|
Hsc_gene_1302.t1
|
Hsc_gene_1302.t1
|
— |
P30683.3 Guanine nucleotide-binding protein G(o) subunit alpha [Lymnaea stagnalis]
|
KAI1716189.1 g-protein alpha subunit domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003924|GO:0007165|GO:0007186|GO:0019001|GO:0031683
|
GO:0005575_0.890|GO:0110165_0.887|GO:0008150_0.835|GO:0016020_0.762|GO:0071944_0.687|GO:0005622_0.677|GO:0009987_0.661|GO:0005886_0.645|GO:0050896_0.616|GO:0003674_0.601|GO:0065007_0.565|GO:0005737_0.548|GO:0050789_0.522|GO:0050794_0.512|GO:0043226_0.511|GO:0051716_0.504
|
IPR001019+28-387_38-388_39-378_57-389_59-382_60-75_193-215_222-239_244-272_290-299+|IPR011025+86-207_87-206+|IPR027417+57-385_60-378+
|
SM00275+38-388+
|
PF00503+39-378+G-protein_alpha_subunit
|
G3DSA:3.40.50.300:FF:002307+195-389+Guanine_nucleotide-binding_protein_G(k)_subunit_alpha
|
PTHR10218+28-387+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-389
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.530
|
44862.820
|
7.936
|
7.000
|
28.792
|
12.339
|
49.614
|
50.386
|
15.938
|
12.853
|
42.159
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
salmon
|
75.888
|
27.823
|
38.954
|
14.034
|
13.711
|
43.993
|
43.420
|
131.915
|
26.951
|
194.104
|
122.467
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
-1.125
|
-1.366
|
— |
1.700
|
— |
1.479
|
-1.460
|
— | — | — | — | — |
No JSON data available for plots.