Hg_chrom5_TN10mRNA_9165
Organism: Heterodera glycines Gene Locus: chr5:1711348-1715544 Feature type: polypeptideProtein Sequence
Length: 176
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.859 | 0.793 | 1.343 | 0.392 | 0.663 | 1.311 | 0.879 | 0.568 | 1.894 | 1.612 | 1.119 | 1.337 | 0.789 | 0.546 | 1.623 | 0.731 | 0.559 | 0.861 | 1.748 | 0.836 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_8619
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
24-Not_Clustered
|
0.624
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
golgi_apparatus
|
— | — |
3-42
|
0.890
|
— | — | — | — |
0.000
|
— | — |
0.189
|
0.398
|
0.016
|
0.380
|
0.168
|
0.396
|
0.530
|
0.041
|
0.321
|
0.066
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0009147
|
1.000
|
1.000
|
Hsc_gene_1299.t1
|
Hsc_gene_1299.t1
|
— |
P62330.2 ADP-ribosylation factor 6 [Homo sapiens]
|
KAH7731004.1 ADP-ribosylation factor 6 [Aphelenchus avenae]
|
No
|
-0.030
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003924|GO:0005525
|
GO:0005575_0.908|GO:0110165_0.901|GO:0005622_0.803|GO:0016020_0.777|GO:0008150_0.775|GO:0005737_0.765|GO:0071944_0.758|GO:0005886_0.729|GO:0003674_0.713|GO:0009987_0.699|GO:0043226_0.687|GO:0043229_0.656|GO:0043227_0.632|GO:0043231_0.595|GO:0005488_0.590|GO:0005773_0.545|GO:0051179_0.535|GO:0006810_0.532|GO:0051234_0.532|GO:0012505_0.525
|
IPR005225+12-137+|IPR006689+1-173_2-172_15-38_43-67_70-95_115-136+|IPR024156+3-174+|IPR027417+3-176_10-171+
|
SM00175+14-147+|SM00177+1-176+|SM00178+1-173+
|
PF00025+2-172+ADP-ribosylation_factor_family
|
G3DSA:3.40.50.300:FF:000286+3-175+ADP-ribosylation_factor_6
|
PTHR11711+3-174+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-176
|
2j5x_B
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.709
|
20017.290
|
10.004
|
8.000
|
27.841
|
9.091
|
44.886
|
55.114
|
16.477
|
11.364
|
43.750
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
turquoise
|
672.856
|
408.390
|
455.174
|
498.742
|
682.396
|
721.815
|
675.115
|
444.225
|
173.354
|
1356.531
|
849.455
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
0.151
|
0.240
|
0.421
|
— | — |
-0.805
|
0.745
|
-3.078
|
— | — | — | — |
No JSON data available for plots.