Hg_chrom5_TN10mRNA_9172
Organism: Heterodera glycines Gene Locus: chr5:1753373-1754375 Feature type: polypeptideProtein Sequence
Length: 85
(Signal peptide: 1-21)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.231 | 0.547 | 0.642 | 4.462 | 0.392 | 0.302 | 1.12 | 0.0 | 0.784 | 1.908 | 0.891 | 0.692 | 1.634 | 0.905 | 0.24 | 1.345 | 0.771 | 0.891 | 0.0 | 0.346 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_8626
|
— | — |
1.444
|
2.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
2.000
|
2.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
1-Not_Clustered
|
0.625
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
signal_peptide
|
extracellular
|
— | — | — | — | — | — |
1-21
|
0.998
|
1.000
|
0.000
|
0.000
|
0.159
|
0.264
|
0.021
|
0.106
|
0.031
|
0.050
|
0.055
|
0.017
|
0.069
|
0.995
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001301
|
4.000
|
1.000
|
Hsc_gene_13278.t1
|
Hsc_gene_13278.t1
|
— | — |
AAW33667.1 unknown [Heterodera glycines]
|
MCA9538637
|
0.230
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-85
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.856
|
8718.380
|
7.279
|
1.000
|
12.941
|
7.059
|
30.588
|
69.412
|
7.059
|
5.882
|
63.529
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
red
|
grey
|
1086.324
|
22.814
|
82.111
|
55.134
|
18.051
|
1251.992
|
7489.485
|
153.974
|
57.246
|
1307.146
|
771.475
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.616
|
1.135
|
-0.465
|
-1.639
|
6.126
|
2.592
|
-3.140
|
5.752
|
-4.650
|
— |
-6.085
|
— | — |