SCN Proteipedia

Hg_chrom5_TN10mRNA_9178

Organism: Heterodera glycines Gene Locus: chr5:1769178-1785402 Feature type: polypeptide

Protein Sequence

Length: 1,408

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.834	1.503	0.684	0.686	0.852	1.238	0.989	1.847	1.231	0.979	0.484	1.128	1.046	0.915	1.0	1.289	1.211	1.055	0.71	0.898	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom5_TN10gene_8632	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	25-Eggs_Female	0.987

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	signal_peptide\|transmembrane_domain	cell_membrane	—	RRNKRRK,RNKRRKMR	1-26	0.986	—	—	—	—	0.003	—	—	0.111	0.027	0.007	0.238	0.254	0.253	0.292	0.041	0.888	0.140

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0004014	1.000	2.000	Hsc_gene_23139.t1;Hsc_gene_23139.t2	Hsc_gene_23139.t1;Hsc_gene_23139.t2	—	Q9U3P2.1 Synaptogenesis protein syg-2 [Caenorhabditis elegans]	KAI1725907.1 immunoglobulin domain-containing protein [Ditylenchus destructor]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0005515	GO:0008150_0.913\|GO:0009987_0.845\|GO:0005575_0.842\|GO:0110165_0.840\|GO:0071944_0.744\|GO:0016020_0.707\|GO:0032502_0.689\|GO:0048856_0.689\|GO:0003674_0.674\|GO:0005886_0.673\|GO:0032501_0.655\|GO:0065007_0.614\|GO:0007275_0.589\|GO:0050789_0.586\|GO:0071840_0.573\|GO:0016043_0.572\|GO:0048731_0.571\|GO:0030154_0.565\|GO:0048869_0.565\|GO:0005488_0.555\|GO:0005515_0.511	IPR003598+66-149_287-357_797-860_889-966+\|IPR003599+60-161_281-371_372-461_473-587_589-690_700-782_791-872_883-977+\|IPR003961+977-1058_980-1069_982-1072_983-1057+\|IPR007110+68-159_164-262_272-363_364-458_467-576_581-674_693-780_785-866_875-975+\|IPR013106+66-160+\|IPR013151+284-355_889-971+\|IPR013162+183-254_476-565+\|IPR013783+56-161_162-267_277-365_366-466_467-584_585-690_691-781_782-871_872-975_976-1077+\|IPR036116+969-1072+\|IPR036179+60-165_164-267_284-353_364-468_463-581_581-693_688-784_784-878_886-973+	SM00060+977-1058+\|SM00408+66-149_287-357_797-860_889-966+\|SM00409+60-161_281-371_372-461_473-587_589-690_700-782_791-872_883-977+	PF00041+983-1057+Fibronectin_type_III_domain\|PF00047+284-355_889-971+Immunoglobulin_domain\|PF07686+66-160+Immunoglobulin_V-set_domain\|PF08205+183-254_476-565+CD80-like_C2-set_immunoglobulin_domain\|PF13895+795-858+Immunoglobulin_domain	—	PTHR45889+43-268+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	1397-1408	1.000	1-1396	—	—

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.831	153872.650	7.020	15.000	20.668	11.435	48.366	51.634	11.790	8.878	55.824

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	darkgrey	violet	818.519	1079.895	1121.614	864.498	666.718	452.550	1375.417	633.611	860.961	612.435	718.946

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-0.174	-0.458	-0.267	-0.406	-0.544	1.614	0.384	1.259	—	—	—	—	—

No JSON data available for plots.

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