SCN Proteipedia

Hg_chrom5_TN10mRNA_9182

Organism: Heterodera glycines Gene Locus: chr5:1822370-1829925 Feature type: polypeptide

Protein Sequence

Length: 1,083

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.666	1.095	1.058	0.382	1.077	1.113	1.418	0.508	0.964	0.911	0.867	1.955	1.308	1.136	1.884	0.673	0.59	1.063	0.568	0.842	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom5_TN10gene_8635	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	19-Eggs_Female	0.968

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal	cytoplasm\|nucleus	—	KRGKNNFVTLKRFKP	—	—	—	—	—	—	0.000	—	—	0.723	0.125	0.029	0.557	0.162	0.069	0.031	0.002	0.136	0.132

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0001302	2.000	3.000	Hsc_gene_13273.t1;Hsc_gene_13273.t2;Hsc_gene_13273.t3	Hsc_gene_13273.t1;Hsc_gene_13273.t2;Hsc_gene_13273.t3	—	Q21770.1 Argonaute protein wago-1 [Caenorhabditis elegans]	KAI1727389.1 piwi domain-containing protein [Ditylenchus destructor]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0003676\|GO:0003723\|GO:0005515	GO:0008150_0.915\|GO:0005575_0.889\|GO:0110165_0.889\|GO:0005622_0.817\|GO:0009987_0.779\|GO:0003674_0.739\|GO:0043226_0.728\|GO:0065007_0.720\|GO:0043229_0.716\|GO:0008152_0.707\|GO:0050789_0.702\|GO:0016020_0.687\|GO:0005488_0.662\|GO:0043170_0.657\|GO:0050794_0.657\|GO:0044237_0.642\|GO:0009058_0.633\|GO:0005737_0.613\|GO:0044249_0.599\|GO:0009059_0.596\|GO:0010467_0.596\|GO:0043227_0.585\|GO:0019222_0.576\|GO:0031323_0.576\|GO:0060255_0.566\|GO:0097159_0.564\|GO:0009889_0.559\|GO:0010556_0.559\|GO:0031326_0.559\|GO:0043231_0.558\|GO:0003676_0.557\|GO:0003723_0.557\|GO:0044238_0.557\|GO:0010468_0.552\|GO:0048519_0.521\|GO:0032502_0.515\|GO:0048523_0.508\|GO:0006139_0.501	IPR003100+409-529_430-536+\|IPR003165+697-1028_699-1028_700-1026+\|IPR012337+684-1025+\|IPR036085+398-569+\|IPR036397+772-1051+	SM00950+699-1028+	PF02170+430-536+PAZ_domain\|PF02171+700-1026+Piwi_domain	—	PTHR22891+179-1033+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	1-168	1.000	169-1083	—	—

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.930	120716.320	9.813	34.500	28.255	9.326	45.614	54.386	15.974	12.281	50.508

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	darkgrey	magenta	11384.254	16714.338	12155.368	8408.133	11081.865	15193.728	16933.433	15248.519	5305.508	9926.211	7945.909

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-0.689	-1.129	-0.423	0.367	0.470	0.167	—	0.294	—	—	—	—	—

No JSON data available for plots.

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