Hg_chrom5_TN10mRNA_9188
Organism: Heterodera glycines Gene Locus: chr5:1906348-1915371 Feature type: polypeptideProtein Sequence
Length: 657
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.673 | 1.522 | 0.803 | 0.63 | 1.116 | 1.444 | 0.634 | 1.142 | 1.015 | 1.172 | 1.176 | 1.612 | 1.649 | 0.79 | 1.243 | 0.978 | 0.549 | 1.084 | 1.171 | 0.806 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_8641
|
— | — |
1.889
|
2.000
|
2.000
|
1.000
|
2.000
|
2.000
|
2.000
|
2.000
|
2.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
22-J4_Male
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
extracellular
|
— |
IRRKGQVKIIKK,RRSSEWHGIRVSRPKSARK
|
99-119
|
0.977
|
— | — | — | — |
0.000
|
— | — |
0.373
|
0.235
|
0.014
|
0.452
|
0.084
|
0.228
|
0.072
|
0.114
|
0.184
|
0.542
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004016
|
1.000
|
2.000
|
Hsc_gene_13277.t1;Hsc_gene_7564.t1
|
Hsc_gene_13277.t1
|
— | — |
KAI3412030.1 hypothetical protein GPALN_002082 [Globodera pallida]
|
NLW28721
|
0.410
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-657
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.854
|
75630.670
|
9.502
|
25.500
|
27.245
|
12.481
|
49.619
|
50.381
|
16.134
|
11.111
|
45.358
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
black
|
166.468
|
1.213
|
14.789
|
5.573
|
23.923
|
152.999
|
25.773
|
216.191
|
0.927
|
562.429
|
321.785
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
3.371
|
2.056
|
-1.296
|
2.069
|
2.688
|
-2.559
|
— |
-2.924
|
-9.455
|
— | — | — | — |
No JSON data available for plots.