Hg_chrom5_TN10mRNA_9190
Organism: Heterodera glycines Gene Locus: chr5:1925931-1929859 Feature type: polypeptideProtein Sequence
Length: 397
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.82 | 1.816 | 1.099 | 0.869 | 1.175 | 1.421 | 0.69 | 1.008 | 1.287 | 1.055 | 0.992 | 1.63 | 1.539 | 0.727 | 0.977 | 0.972 | 0.743 | 0.763 | 0.775 | 0.519 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_8643
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
11-Not_described
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.393
|
0.107
|
0.012
|
0.653
|
0.247
|
0.223
|
0.089
|
0.059
|
0.127
|
0.230
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0002172
|
1.000
|
3.000
|
Hsc_gene_13280.t1;Hsc_gene_13280.t2;Hsc_gene_13283.t1
|
— | — | — |
KAI3421820.1 SPRY domain-containing protein 3 [Globodera pallida]
|
KAI4270341
|
0.200
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
GO:0008150_0.951|GO:0009987_0.663|GO:0065007_0.598|GO:0050789_0.585|GO:0050794_0.563|GO:0008152_0.541|GO:0005575_0.537|GO:0110165_0.531|GO:0044238_0.524|GO:0044237_0.518|GO:0009058_0.517|GO:0044249_0.505
|
IPR001870+198-391+|IPR003877+270-390_273-387+|IPR013320+208-388+|IPR043136+207-397+|IPR044736+257-387+|IPR050618+120-387+
|
SM00449+270-390+
|
PF00622+273-387+SPRY_domain
|
— |
PTHR12864+120-387+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-145
|
1.000
|
146-397
|
8bv0_D
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.648
|
44771.580
|
5.905
|
-3.000
|
26.448
|
10.327
|
51.134
|
48.866
|
13.350
|
13.098
|
49.370
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
skyblue
|
grey
|
573.965
|
481.717
|
511.711
|
574.198
|
977.186
|
435.421
|
937.384
|
213.020
|
192.566
|
817.683
|
549.776
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — |
0.278
|
0.736
|
-1.152
|
1.117
|
-1.138
|
2.281
|
— | — | — | — | — |
No JSON data available for plots.