Hg_chrom5_TN10mRNA_9191
Organism: Heterodera glycines Gene Locus: chr5:1932157-1933406 Feature type: polypeptideProtein Sequence
Length: 126
(Signal peptide: 1-18)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.831 | 1.107 | 0.577 | 0.547 | 0.794 | 1.832 | 0.661 | 0.397 | 0.882 | 2.145 | 0.722 | 1.401 | 1.764 | 1.068 | 0.162 | 1.587 | 0.651 | 1.323 | 0.611 | 0.233 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_8644
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
|
Yes
|
— | — | — | — | — |
30-Not_Clustered
|
0.901
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
— |
mitochondrion
|
nucleus
|
KKAFLSVGLPKKQLK
|
— | — | — | — |
1-18
|
0.991
|
1.000
|
0.000
|
0.000
|
0.328
|
0.606
|
0.023
|
0.384
|
0.335
|
0.113
|
0.191
|
0.155
|
0.376
|
0.337
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001303
|
1.000
|
4.000
|
Hsc_gene_13282.t1;Hsc_gene_1612.t1;Hsc_gene_1619.t1;Hsc_gene_19479.t1
|
Hsc_gene_13282.t1;Hsc_gene_13286.t2
|
— | — |
KAI3412061.1 hypothetical protein GPALN_002106 [Globodera pallida]
|
MDD4126335
|
0.190
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-126
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.702
|
13642.850
|
4.647
|
-2.500
|
14.286
|
8.730
|
41.270
|
58.730
|
6.349
|
7.937
|
51.587
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
grey
|
53.298
|
4.320
|
16.875
|
30.770
|
8.491
|
14.480
|
3.750
|
11.582
|
215.246
|
37.892
|
113.901
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.731
|
2.700
|
0.982
|
-1.894
|
— |
-1.933
|
— |
-1.482
|
— | — | — | — | — |