Hg_chrom5_TN10mRNA_9194
Organism: Heterodera glycines Gene Locus: chr5:1954660-1963709 Feature type: polypeptideProtein Sequence
Length: 560
(Signal peptide: 1-24)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.457 | 1.163 | 0.909 | 0.369 | 2.202 | 1.007 | 0.702 | 0.714 | 1.508 | 1.11 | 2.11 | 1.576 | 1.488 | 0.584 | 1.02 | 0.663 | 0.351 | 0.731 | 0.824 | 0.84 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_8647
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
|
Yes
|
— | — | — | — | — |
17-ppJ2_pJ2
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
nuclear_localization_signal
|
cytoplasm
|
nucleus
|
KRKR,RKWIKEYGSPKRIYK,RKIVIFNDLKMEKLKKL,KKKGKMEEKRNIEEKGKEK,KKQRAQREKEEREQRKERI,RREEEKKQRAQREKEEREQRKE
|
— | — | — | — |
1-24
|
0.890
|
0.661
|
0.000
|
0.000
|
0.479
|
0.155
|
0.009
|
0.590
|
0.221
|
0.103
|
0.100
|
0.004
|
0.224
|
0.229
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0009151
|
1.000
|
1.000
|
Hsc_gene_13294.t1
|
— | — |
Q54QD5.1 Probable serine/threonine-protein kinase nek1 [Dictyostelium discoideum]
|
KAI3413237.1 3-phosphoinositide dependent protein kinase-1 [Globodera pallida]
|
RPI72334
|
0.010
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004672|GO:0005524|GO:0006468
|
GO:0005575_0.883|GO:0110165_0.883|GO:0008150_0.861|GO:0009987_0.825|GO:0005622_0.794|GO:0065007_0.761|GO:0016020_0.756|GO:0050789_0.741|GO:0050794_0.716|GO:0043226_0.705|GO:0043229_0.693|GO:0005737_0.623|GO:0043227_0.570|GO:0043231_0.542|GO:0003674_0.518
|
IPR000719+181-491_187-479+|IPR011009+187-485+
|
— |
PF00069+187-479+Protein_kinase_domain
|
— |
PTHR44167+143-524+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
37-183;558-560
|
2.000
|
1-36;184-557
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.617
|
65763.590
|
8.388
|
8.000
|
38.571
|
10.714
|
54.286
|
45.714
|
20.357
|
18.214
|
35.536
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
green
|
2022.534
|
78.692
|
725.768
|
483.586
|
138.716
|
74.505
|
23.423
|
70.919
|
9883.545
|
837.576
|
4714.420
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
2.976
|
2.482
|
-0.478
|
-1.834
|
-0.882
|
-1.660
|
— |
-1.458
|
3.454
|
-4.176
|
— | — | — |