SCN Proteipedia

Hg_chrom5_TN10mRNA_9195

Organism: Heterodera glycines Gene Locus: chr5:1964182-1967865 Feature type: polypeptide

Protein Sequence

Length: 341

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	1.296	1.228	0.48	0.708	1.124	0.752	1.222	0.88	1.76	1.149	0.711	1.38	0.57	0.733	1.257	0.922	1.01	0.933	0.451	0.69	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom5_TN10gene_8648	—	—	1.111	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	2.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	26-J3_J4	0.997

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	peroxisomal_targeting_signal	cytoplasm	—	—	—	—	—	—	—	—	0.000	—	—	0.282	0.242	0.106	0.634	0.055	0.109	0.062	0.396	0.139	0.061

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0004017	2.000	1.000	Hsc_gene_13295.t1	Hsc_gene_13295.t1;Hsc_gene_13297.t1;Hsc_gene_13298.t1	—	Q93244.2 Cysteine synthase 1 [Caenorhabditis elegans]	KAI3408867.1 Cysteine synthase 1 [Globodera pallida]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0004124\|GO:0006535	GO:0008150_0.880\|GO:0003674_0.834\|GO:0009987_0.733\|GO:0003824_0.705\|GO:0008152_0.671\|GO:0044237_0.639\|GO:0044238_0.638\|GO:0005575_0.625\|GO:0009058_0.624\|GO:0044281_0.604\|GO:0110165_0.600\|GO:0044249_0.599\|GO:0006082_0.570\|GO:0019752_0.570\|GO:0043436_0.570\|GO:0044283_0.560\|GO:0006520_0.557\|GO:1901605_0.556\|GO:0016053_0.554\|GO:0046394_0.554\|GO:0170033_0.553\|GO:0170039_0.553\|GO:0008652_0.550\|GO:1901607_0.549\|GO:0006790_0.548\|GO:0170034_0.548\|GO:0170038_0.547\|GO:0044272_0.545\|GO:0000096_0.541\|GO:0000097_0.541\|GO:0006534_0.541\|GO:0009069_0.541\|GO:0009070_0.541\|GO:0019344_0.541\|GO:0016740_0.513	IPR001216+37-55+\|IPR001926+14-303+\|IPR005856+14-315+\|IPR005859+14-315+\|IPR036052+14-311_14-315_49-151+\|IPR050214+12-320+	—	PF00291+14-303+Pyridoxal-phosphate_dependent_enzyme	G3DSA:3.40.50.1100:FF:000006+124-311+Cysteine_synthase	PTHR10314+12-320+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	—	—	1.000	1-341	2isq_A	STRUCT_HOMOLOG

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.866	36409.760	8.575	8.000	21.994	6.745	42.815	57.185	12.610	9.384	53.959

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	purple	grey60	630.645	496.630	428.485	645.853	657.223	1052.190	386.891	626.368	871.141	495.601	656.547

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-0.444	0.242	0.702	—	0.694	-1.433	-0.856	-0.551	—	—	—	—	-3.598

No JSON data available for plots.

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