Hg_chrom5_TN10mRNA_9201
Organism: Heterodera glycines Gene Locus: chr5:1991889-1996228 Feature type: polypeptideProtein Sequence
Length: 508
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.732 | 1.236 | 1.288 | 0.611 | 1.017 | 1.363 | 0.726 | 0.787 | 1.487 | 1.383 | 1.432 | 1.505 | 1.476 | 0.681 | 1.004 | 0.759 | 0.839 | 0.507 | 0.757 | 0.868 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_8654
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — |
Hsc_gene_13299
|
— |
21-pJ2_J3
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
nuclear_localization_signal
|
cytoplasm
|
nucleus
|
KRKETAVKNDMAIKLPKR,KRSKCLVKQIVGKRRRLS,RKETAVKNDMAIKLPKRSK
|
— | — | — | — | — |
0.707
|
0.386
|
0.000
|
— |
0.441
|
0.348
|
0.014
|
0.469
|
0.180
|
0.193
|
0.139
|
0.003
|
0.152
|
0.428
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0009152
|
1.000
|
1.000
|
Hsc_gene_13299.t1
|
Hsc_gene_13299.t1
|
— |
Q6RET7.1 Calcium and calcium/calmodulin-dependent serine/threonine-protein kinase DMI-3 [Medicago truncatula]
|
KAI3420120.1 Calcium-dependent protein kinase 4, variant 2 [Globodera pallida]
|
WP_049949568
|
0.070
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004672|GO:0005524|GO:0006468
|
GO:0008150_0.870|GO:0005575_0.749|GO:0110165_0.738|GO:0009987_0.734|GO:0003674_0.674|GO:0005622_0.629|GO:0016020_0.562|GO:0005737_0.528|GO:0003824_0.505
|
IPR000719+57-402_57-411_60-399+|IPR011009+57-404+|IPR017441+63-92+
|
SM00220+57-402+
|
PF00069+60-399+Protein_kinase_domain
|
— |
PTHR44167+17-399+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
489-508
|
1.000
|
1-488
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.706
|
58032.550
|
8.509
|
10.000
|
29.134
|
10.827
|
50.197
|
49.803
|
15.945
|
13.189
|
43.898
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
pink
|
268.270
|
1.083
|
13.885
|
189.902
|
173.333
|
34.836
|
33.112
|
13.020
|
240.811
|
820.883
|
572.281
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
3.466
|
7.332
|
3.880
|
— |
-2.301
|
— |
-1.538
|
1.499
|
— | — | — | — | — |