Hg_chrom5_TN10mRNA_9214
Organism: Heterodera glycines Gene Locus: chr5:2064935-2074920 Feature type: polypeptideProtein Sequence
Length: 1,130
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.533 | 1.07 | 0.579 | 0.732 | 0.826 | 1.77 | 0.99 | 1.991 | 0.826 | 1.052 | 0.349 | 1.562 | 1.008 | 1.157 | 0.975 | 1.58 | 0.885 | 0.644 | 0.204 | 0.26 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_8667
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
27-Not_Clustered
|
0.956
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.803
|
0.099
|
0.011
|
0.349
|
0.062
|
0.038
|
0.066
|
0.050
|
0.094
|
0.070
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0009158
|
1.000
|
1.000
|
Hsc_gene_13310.t1
|
Hsc_gene_13310.t1;Hsc_gene_13314.t1
|
— |
Q20595.3 C-terminal-binding protein 1 [Caenorhabditis elegans]
|
KAI1696650.1 d-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003714|GO:0016616|GO:0051287
|
GO:0005575_0.882|GO:0110165_0.875|GO:0008150_0.865|GO:0009987_0.794|GO:0003674_0.759|GO:0005622_0.752|GO:0016020_0.698|GO:0065007_0.662|GO:0043226_0.652|GO:0050789_0.649|GO:0050794_0.637|GO:0043229_0.630|GO:0005488_0.627|GO:0008152_0.585|GO:0043227_0.578|GO:0044237_0.573|GO:0043231_0.540|GO:0005515_0.536|GO:0044238_0.525
|
IPR006139+397-716+|IPR006140+492-680+|IPR006612+1-79_5-61+|IPR036291+487-682+|IPR043322+387-710+|IPR051638+353-770+
|
— |
PF00389+397-716+D-isomer_specific_2-hydroxyacid_dehydrogenase,_catalytic_domain|PF02826+492-680+D-isomer_specific_2-hydroxyacid_dehydrogenase,_NAD_binding_domain|PF05485+5-61+THAP_domain
|
— |
PTHR46029+353-770+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
136-324;868-1130
|
2.000
|
1-135;325-867
|
2hu2_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.852
|
118971.840
|
6.906
|
10.500
|
19.204
|
8.761
|
47.168
|
52.832
|
11.062
|
8.142
|
58.142
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
turquoise
|
794.295
|
567.192
|
1003.560
|
789.208
|
696.402
|
1081.771
|
958.101
|
1179.549
|
186.149
|
982.012
|
640.928
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.594
|
0.340
|
-0.238
|
-0.213
|
0.650
|
-0.166
|
— | — | — | — | — | — | — |
No JSON data available for plots.