Hg_chrom5_TN10mRNA_9215
Organism: Heterodera glycines Gene Locus: chr5:2075150-2083309 Feature type: polypeptideProtein Sequence
Length: 678
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.755 | 1.029 | 1.18 | 0.458 | 0.811 | 1.135 | 0.737 | 0.737 | 1.213 | 1.475 | 0.827 | 1.562 | 1.106 | 1.021 | 1.294 | 1.496 | 1.016 | 0.894 | 0.34 | 0.347 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_8668
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
26-J3_J4
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
extracellular
|
— |
KHKRRNGNHRASRDKRFWRRSQRRRR
|
— | — | — | — | — | — |
0.000
|
— | — |
0.147
|
0.384
|
0.034
|
0.223
|
0.102
|
0.117
|
0.192
|
0.281
|
0.148
|
0.825
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0009159
|
1.000
|
1.000
|
Hsc_gene_13315.t1
|
Hsc_gene_13311.t1;Hsc_gene_13315.t1
|
— | — |
KAI6237497.1 BPI2 domain-containing protein [Aphelenchoides besseyi]
|
No
|
-0.120
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0008289
|
— |
IPR001124+412-554_416-650+|IPR017943+36-151_394-541+|IPR032942+7-553+
|
SM00329+416-650+
|
PF02886+412-554+LBP_/_BPI_/_CETP_family,_C-terminal_domain
|
— |
PTHR10504+7-553+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
239-302;349-415;674-678
|
3.000
|
1-238;303-348;416-673
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.836
|
74542.020
|
8.051
|
8.000
|
24.631
|
7.080
|
50.147
|
49.853
|
13.274
|
11.357
|
52.802
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
purple
|
turquoise
|
476.088
|
62.421
|
57.385
|
43.541
|
200.672
|
591.768
|
129.081
|
147.305
|
716.664
|
1083.323
|
926.184
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.352
|
-0.656
|
— |
2.171
|
1.576
|
-2.186
|
-2.121
|
— | — | — | — | — | — |
No JSON data available for plots.