Hg_chrom5_TN10mRNA_9216
Organism: Heterodera glycines Gene Locus: chr5:2088384-2090693 Feature type: polypeptideProtein Sequence
Length: 251
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.741 | 1.297 | 1.159 | 0.687 | 0.93 | 1.226 | 0.901 | 1.195 | 1.594 | 1.077 | 0.604 | 0.703 | 1.328 | 0.69 | 2.439 | 0.74 | 1.045 | 0.543 | 1.839 | 0.352 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_8669
|
— | — |
1.778
|
2.000
|
2.000
|
1.000
|
2.000
|
2.000
|
2.000
|
1.000
|
2.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
14-Not_Clustered
|
0.653
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— | — |
7-28
|
0.851
|
— | — | — | — |
0.000
|
— | — |
0.224
|
0.301
|
0.018
|
0.519
|
0.310
|
0.240
|
0.165
|
0.084
|
0.536
|
0.288
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — | — |
Hsc_gene_5149.t1
|
— |
Q19768.3 Receptor-type guanylate cyclase gcy-13 [Caenorhabditis elegans]
|
AAC72366.2 guanylyl cyclase [Heterodera glycines]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.935|GO:0005575_0.772|GO:0110165_0.742|GO:0009987_0.643|GO:0050896_0.623|GO:0003674_0.599|GO:0016020_0.571|GO:0032501_0.567
|
IPR011009+57-116+|IPR050401+48-131+
|
— | — | — |
PTHR11920+48-131+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
250-251
|
1.000
|
1-249
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.800
|
28911.730
|
10.245
|
13.000
|
30.279
|
10.757
|
52.191
|
47.809
|
18.327
|
11.952
|
46.614
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
skyblue
|
grey60
|
774.414
|
1225.594
|
1011.519
|
1101.580
|
1209.121
|
776.309
|
631.507
|
504.268
|
470.176
|
612.966
|
551.770
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.506
|
-0.291
|
0.231
|
— |
-0.625
|
-0.288
|
-0.730
|
0.467
|
— | — | — | — | — |
No JSON data available for plots.