Hg_chrom5_TN10mRNA_9217
Organism: Heterodera glycines Gene Locus: chr5:2092301-2093152 Feature type: polypeptideProtein Sequence
Length: 66
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.057 | 1.057 | 0.275 | 1.045 | 0.0 | 0.777 | 0.541 | 1.515 | 0.673 | 1.024 | 0.689 | 2.674 | 2.104 | 1.166 | 2.474 | 1.948 | 1.242 | 0.459 | 0.0 | 0.446 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_8670
|
— | — |
1.889
|
2.000
|
2.000
|
1.000
|
2.000
|
1.000
|
2.000
|
2.000
|
2.000
|
3.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
8-Eggs_J4_Males
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm|mitochondrion
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.313
|
0.633
|
0.037
|
0.487
|
0.028
|
0.016
|
0.021
|
0.090
|
0.121
|
0.254
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
KAH8983987
|
0.170
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-66
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.702
|
7404.600
|
12.301
|
11.000
|
21.212
|
12.121
|
50.000
|
50.000
|
19.697
|
1.515
|
53.030
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
purple
|
salmon
|
17.157
|
28.412
|
14.355
|
9.593
|
11.092
|
31.315
|
6.282
|
14.568
|
6.522
|
26.814
|
18.117
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.213
|
-1.703
|
— | — |
1.514
|
-2.303
|
-1.208
|
-1.068
|
— | — | — | — | — |
No JSON data available for plots.