Hg_chrom5_TN10mRNA_9219
Organism: Heterodera glycines Gene Locus: chr5:2101226-2119031 Feature type: polypeptideProtein Sequence
Length: 2,190
(Signal peptide: 1-23)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.669 | 1.338 | 0.93 | 0.441 | 1.575 | 1.311 | 0.593 | 1.027 | 1.35 | 1.462 | 1.501 | 2.015 | 1.598 | 0.448 | 0.904 | 0.672 | 0.719 | 0.664 | 1.475 | 0.698 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_8672
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
30-pJ2
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— |
KKKR,RKCFGEQRERRRKLE,RRGIELISRQIHSRKFGR,KKLEEKYGKKTAETKPKKK,KKTAETKPKKKKAKRTKNK,RRKLAWENVPKLMRKEKIK,KRPNNSFKGKMKANLKKKF
|
— | — | — | — |
1-23
|
0.550
|
0.735
|
0.000
|
0.000
|
0.610
|
0.188
|
0.005
|
0.598
|
0.122
|
0.169
|
0.121
|
0.019
|
0.099
|
0.095
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0009160
|
1.000
|
1.000
|
Hsc_gene_11006.t1
|
Hsc_gene_13317.t1
|
— | — |
XP_053694071.1 poly(A) polymerase type 3-like [Sabethes cyaneus];XP_053694072.1 poly(A) polymerase type 3-like [Sabethes cyaneus];XP_053694073.1 poly(A) polymerase type 3-like [Sabethes cyaneus];XP_053694074.1 poly(A) polymerase type 3-like [Sabethes cyaneus];XP_053694075.1 poly(A) polymerase type 3-like [Sabethes cyaneus]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:1990817
|
GO:0005575_0.710|GO:0110165_0.707|GO:0016020_0.659|GO:0005622_0.652|GO:0043226_0.626|GO:0043229_0.616|GO:0008150_0.605|GO:0043227_0.580|GO:0043231_0.580|GO:0003674_0.538
|
IPR007012+1871-2039+
|
— |
PF04928+1871-2039+Poly(A)_polymerase_central_domain
|
— |
PTHR10682+1868-2184+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1187-1342
|
2.000
|
1-1186;1343-2190
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.514
|
255263.960
|
7.250
|
17.500
|
30.959
|
12.100
|
50.913
|
49.087
|
16.393
|
14.566
|
38.676
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
green
|
889.466
|
15.570
|
95.265
|
287.793
|
132.366
|
49.438
|
39.147
|
52.720
|
1247.564
|
2703.627
|
2079.600
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
2.382
|
4.069
|
1.704
|
-1.150
|
-1.407
|
— | — | — | — |
-1.943
|
-4.100
|
— | — |