Hg_chrom5_TN10mRNA_9222
Organism: Heterodera glycines Gene Locus: chr5:2134045-2141495 Feature type: polypeptideProtein Sequence
Length: 850
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.889 | 1.696 | 0.62 | 0.365 | 1.686 | 2.262 | 0.812 | 1.235 | 0.837 | 1.304 | 1.105 | 1.246 | 0.49 | 0.566 | 1.248 | 1.059 | 1.08 | 0.553 | 0.271 | 0.208 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_8675
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
20-Egg_ppJ2_pJ2_J3_J4
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
KRTTYEKRKGINGRKKKMA
|
— | — | — | — | — | — |
0.000
|
— | — |
0.586
|
0.134
|
0.028
|
0.453
|
0.137
|
0.068
|
0.056
|
0.011
|
0.213
|
0.109
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000314
|
2.000
|
7.000
|
Hsc_gene_10991.t1;Hsc_gene_10991.t2;Hsc_gene_10995.t1;Hsc_gene_15127.t1;Hsc_gene_7098.t1;Hsc_gene_7103.t1;Hsc_gene_7103.t2
|
Hsc_gene_11003.t1
|
— | — |
KAH7710423.1 golgin subfamily A member 2-like protein [Aphelenchus avenae]
|
No
|
-0.090
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-393;561-850
|
1.000
|
394-560
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.758
|
94605.470
|
7.438
|
9.500
|
29.412
|
5.294
|
59.529
|
40.471
|
15.882
|
13.529
|
46.824
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
1001.629
|
1480.908
|
1167.476
|
1236.853
|
1033.010
|
859.241
|
697.570
|
904.639
|
843.461
|
982.146
|
922.710
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.574
|
-0.397
|
0.193
|
-0.292
|
-0.251
|
-0.291
|
— |
-0.234
|
— | — | — |
11.349
|
10.152
|
No JSON data available for plots.