Hg_chrom5_TN10mRNA_9226
Organism: Heterodera glycines Gene Locus: chr5:2227151-2230999 Feature type: polypeptideProtein Sequence
Length: 319
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.838 | 1.094 | 1.425 | 0.865 | 0.784 | 0.884 | 1.082 | 1.097 | 0.975 | 1.144 | 0.665 | 1.291 | 0.61 | 0.603 | 1.152 | 1.433 | 0.514 | 1.615 | 0.965 | 0.83 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_8679
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
23-Not_Clustered
|
0.853
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal|nuclear_export_signal
|
cytoplasm|nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.858
|
0.097
|
0.014
|
0.479
|
0.167
|
0.189
|
0.062
|
0.019
|
0.066
|
0.018
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0009162
|
1.000
|
1.000
|
Hsc_gene_11001.t1
|
Hsc_gene_11001.t1
|
— |
Q5BLX8.1 WD repeat domain-containing protein 83 [Rattus norvegicus]
|
KAH7705252.1 WD domain-containing protein [Aphelenchus avenae]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
GO:0005575_0.820|GO:0110165_0.813|GO:0008150_0.779|GO:0005622_0.738|GO:0005737_0.657|GO:0009987_0.646|GO:0016020_0.565|GO:0043226_0.505
|
IPR001680+14-53_16-53_21-53_56-95_98-137_99-137_141-178_143-178_181-218_221-262_224-262_249-271_265-305+|IPR015943+13-307+|IPR019775+249-263+|IPR020472+40-54_165-179_249-263+|IPR036322+13-303+|IPR051980+13-304+
|
SM00320+14-53_56-95_98-137_141-178_181-218_221-262_265-305+
|
PF00400+16-53_99-137_143-178_224-262+WD_domain,_G-beta_repeat
|
— |
PTHR22842+13-304+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
318-319
|
1.000
|
1-317
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.694
|
34573.970
|
5.393
|
-4.500
|
24.765
|
8.464
|
46.082
|
53.918
|
12.226
|
12.539
|
58.307
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
red
|
turquoise
|
513.446
|
438.265
|
415.052
|
458.072
|
501.847
|
606.249
|
739.488
|
489.273
|
185.095
|
739.414
|
501.849
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.310
|
— |
0.253
|
— |
0.287
|
0.297
|
-0.417
|
0.740
|
— | — | — | — | — |
No JSON data available for plots.