Hg_chrom5_TN10mRNA_9227
Organism: Heterodera glycines Gene Locus: chr5:2231131-2235271 Feature type: polypeptideProtein Sequence
Length: 495
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.916 | 1.175 | 0.624 | 1.672 | 0.673 | 1.191 | 0.553 | 1.515 | 0.898 | 1.665 | 0.704 | 1.188 | 1.459 | 0.894 | 1.567 | 1.356 | 0.795 | 0.826 | 0.777 | 0.297 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_8680
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
23-Not_Clustered
|
0.802
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_export_signal
|
cytoplasm
|
— |
RKIKLSHFYRLFDKMKRN
|
55-78
|
0.980
|
— | — | — | — |
0.000
|
— | — |
0.493
|
0.345
|
0.012
|
0.564
|
0.194
|
0.151
|
0.126
|
0.040
|
0.268
|
0.091
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000420
|
1.000
|
7.000
|
Hsc_gene_10996.t1;Hsc_gene_10997.t1;Hsc_gene_10999.t1;Hsc_gene_10999.t2;Hsc_gene_11000.t1;Hsc_gene_11000.t2;Hsc_gene_15126.t1
|
Hsc_gene_10997.t1;Hsc_gene_10999.t1;Hsc_gene_10999.t2;Hsc_gene_11000.t1;Hsc_gene_11000.t2
|
— | — |
CAD2200960.1 unnamed protein product [Meloidogyne enterolobii]
|
No
|
-0.030
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
— |
IPR001611+294-315+|IPR003591+244-266_292-315+|IPR032675+172-403+|IPR050715+211-354+
|
SM00369+244-266_292-315+
|
— | — |
PTHR45752+211-354+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-495
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.807
|
55337.110
|
9.397
|
31.500
|
22.828
|
10.303
|
46.869
|
53.131
|
15.354
|
7.475
|
50.303
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
red
|
grey
|
543.005
|
414.027
|
546.217
|
580.569
|
768.589
|
613.246
|
1551.544
|
556.033
|
57.859
|
445.920
|
279.608
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.169
|
0.350
|
0.198
|
0.373
|
-0.311
|
1.350
|
-0.248
|
1.624
|
— | — | — | — |
6.405
|
No JSON data available for plots.