Hg_chrom5_TN10mRNA_9231
Organism: Heterodera glycines Gene Locus: chr5:2258991-2263080 Feature type: polypeptideProtein Sequence
Length: 296
(Signal peptide: 1-27)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.746 | 0.864 | 0.799 | 3.611 | 0.901 | 1.213 | 0.925 | 1.858 | 0.901 | 0.867 | 0.563 | 1.192 | 0.845 | 1.494 | 0.621 | 1.496 | 0.831 | 0.665 | 0.52 | 0.795 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_8684
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
9-Not_Clustered
|
0.702
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
signal_peptide
|
extracellular
|
— | — | — | — | — | — |
1-27
|
0.974
|
0.997
|
0.000
|
0.000
|
0.257
|
0.249
|
0.017
|
0.292
|
0.145
|
0.261
|
0.204
|
0.014
|
0.152
|
0.921
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0009163
|
1.000
|
1.000
|
Hsc_gene_7096.t1
|
Hsc_gene_7096.t1
|
— |
P0DV03.1 PI-stichotoxin-Hcr2m [Heteractis crispa]
|
KAI1723964.1 kunitz/Bovine pancreatic trypsin inhibitor domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004867|GO:0005576|GO:0030414
|
GO:0005575_0.758|GO:0110165_0.755|GO:0008150_0.746|GO:0003674_0.681|GO:0065007_0.568|GO:0005488_0.552|GO:0071944_0.548|GO:0005515_0.533
|
IPR002223+184-198_185-238_186-237_187-237_212-222_222-237+|IPR008197+127-160+|IPR020901+215-233+|IPR036645+120-178_121-162+|IPR036880+180-240_182-238+|IPR050098+178-252+
|
SM00131+185-238+
|
PF00014+186-237+Kunitz/Bovine_pancreatic_trypsin_inhibitor_domain|PF00095+127-160+WAP-type_(Whey_Acidic_Protein)_'four-disulfide_core'
|
G3DSA:4.10.410.10:FF:000017+181-239+papilin_isoform_X2
|
PTHR10083+178-252+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-296
|
2ody_F
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.748
|
31849.060
|
5.914
|
-3.500
|
20.270
|
10.135
|
44.257
|
55.743
|
10.473
|
9.797
|
60.473
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
blue
|
448.344
|
23.951
|
62.748
|
54.781
|
11.573
|
27.866
|
17.025
|
51.264
|
24.370
|
1849.774
|
1067.458
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.161
|
1.056
|
— |
-2.279
|
1.284
|
-0.701
|
0.771
|
-1.447
|
— | — |
-5.240
|
— | — |