Hg_chrom5_TN10mRNA_9235
Organism: Heterodera glycines Gene Locus: chr5:2273380-2275213 Feature type: polypeptideProtein Sequence
Length: 374
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.871 | 0.808 | 0.535 | 0.738 | 0.668 | 1.92 | 2.515 | 0.936 | 0.535 | 0.795 | 0.243 | 2.202 | 0.668 | 2.52 | 0.873 | 0.84 | 0.394 | 0.729 | 0.617 | 0.629 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_8688
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
8-Eggs_J4_Males
|
0.988
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide|transmembrane_domain
|
cell_membrane
|
— | — | — | — | — | — | — | — |
0.086
|
— | — |
0.064
|
0.048
|
0.005
|
0.170
|
0.476
|
0.315
|
0.510
|
0.002
|
0.606
|
0.219
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0009167
|
1.000
|
1.000
|
Hsc_gene_7091.t1
|
Hsc_gene_7091.t1
|
— | — |
KHN71547.1 Cuticle collagen dpy-5 [Toxocara canis]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0042302
|
— |
IPR002486+5-57_9-57+|IPR008160+283-341+|IPR050632+14-355+
|
SM01088+5-57+
|
PF01391+283-341+Collagen_triple_helix_repeat_(20_copies)|PF01484+9-57+Nematode_cuticle_collagen_N-terminal_domain
|
— |
PTHR24637+14-355+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
106-374
|
1.000
|
1-105
|
9han_E
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.976
|
37744.230
|
6.372
|
-0.500
|
14.706
|
7.219
|
33.957
|
66.043
|
7.754
|
6.952
|
63.369
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
grey
|
578.171
|
281.979
|
57.816
|
38.495
|
64.981
|
2925.187
|
22.413
|
1603.491
|
67.500
|
605.988
|
375.207
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-2.517
|
-3.009
|
-0.477
|
0.723
|
5.507
|
-7.019
|
-0.984
|
-6.013
|
-3.295
|
— |
-3.090
|
— | — |
No JSON data available for plots.