Hg_chrom5_TN10mRNA_9239
Organism: Heterodera glycines Gene Locus: chr5:2303373-2305648 Feature type: polypeptideProtein Sequence
Length: 194
(Signal peptide: 1-22)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.659 | 0.36 | 1.218 | 2.488 | 1.289 | 0.661 | 0.675 | 1.546 | 0.573 | 0.906 | 1.64 | 0.91 | 1.861 | 0.595 | 0.842 | 1.252 | 0.93 | 0.703 | 1.983 | 0.758 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_8692
|
— | — |
1.222
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
3.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
24-Not_Clustered
|
0.562
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
— |
extracellular
|
nucleus
|
KHSSEKHRKKK
|
— | — | — | — |
1-22
|
0.998
|
1.000
|
0.000
|
0.000
|
0.139
|
0.372
|
0.033
|
0.212
|
0.100
|
0.042
|
0.103
|
0.020
|
0.151
|
0.962
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0009169
|
1.000
|
1.000
|
Hsc_gene_7088.t1
|
Hsc_gene_7088.t1
|
— |
P04054.3 Phospholipase A2 [Homo sapiens]
|
OUC48018.1 phospholipase A2 [Trichinella nativa]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004623|GO:0005509|GO:0006644|GO:0016042|GO:0050482
|
GO:0008150_0.861|GO:0005575_0.858|GO:0110165_0.858|GO:0003674_0.821|GO:0009987_0.721|GO:0003824_0.640|GO:0016787_0.624|GO:0016788_0.612|GO:0016298_0.601|GO:0052689_0.601|GO:0004620_0.597|GO:0004623_0.597|GO:0008152_0.577|GO:0044238_0.577|GO:0044237_0.561|GO:0065007_0.552|GO:0050789_0.535|GO:0006629_0.512|GO:0005488_0.509|GO:0044255_0.508
|
IPR001211+8-168_42-60_61-79+|IPR016090+23-168_26-109+|IPR033113+68-75+|IPR036444+24-176_27-165+
|
SM00085+23-168+
|
PF00068+26-109+Phospholipase_A2
|
— |
PTHR11716+8-168+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
170-194
|
1.000
|
1-169
|
3v9m_B
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.621
|
22209.320
|
7.445
|
4.000
|
32.474
|
14.948
|
51.031
|
48.969
|
18.041
|
14.433
|
48.969
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
skyblue
|
73.368
|
1.067
|
4.886
|
98.225
|
30.119
|
90.302
|
377.267
|
66.245
|
52.285
|
31.227
|
40.252
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.959
|
6.382
|
4.454
|
-1.735
|
1.597
|
2.072
|
-0.554
|
2.652
|
— | — | — | — | — |