Hg_chrom5_TN10mRNA_9245
Organism: Heterodera glycines Gene Locus: chr5:2332651-2336293 Feature type: polypeptideProtein Sequence
Length: 416
(Signal peptide: 1-19)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.867 | 1.509 | 0.918 | 0.414 | 1.122 | 0.986 | 0.63 | 1.442 | 1.709 | 1.527 | 0.911 | 1.555 | 1.202 | 1.156 | 1.521 | 0.721 | 0.355 | 0.619 | 1.294 | 0.778 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_8696
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
6-pJ2_J3_J4_Male
|
0.985
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
— |
cytoplasm|extracellular
|
— | — | — | — | — | — |
1-19
|
0.833
|
0.999
|
0.000
|
0.000
|
0.231
|
0.393
|
0.032
|
0.492
|
0.205
|
0.181
|
0.172
|
0.227
|
0.230
|
0.676
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0002001
|
3.000
|
1.000
|
Hsc_gene_7078.t1
|
Hsc_gene_5092.t1;Hsc_gene_7078.t1
|
— |
A6H730.1 Prostatic acid phosphatase [Bos taurus]
|
KAF7639985.1 putative GTP-binding protein 6 [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.763|GO:0110165_0.751|GO:0008150_0.747|GO:0009987_0.682|GO:0016020_0.623|GO:0003674_0.620|GO:0005622_0.620|GO:0043226_0.563|GO:0043229_0.548|GO:0043227_0.520
|
IPR000560+21-343_21-344+|IPR029033+20-392_21-377+|IPR033379+22-36_285-301+|IPR050645+11-371+
|
— |
PF00328+21-343+Histidine_phosphatase_superfamily_(branch_2)
|
— |
PTHR11567+11-371+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-416
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.807
|
47829.220
|
9.203
|
13.000
|
28.125
|
11.538
|
45.673
|
54.327
|
16.346
|
11.779
|
42.788
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
grey
|
547.617
|
193.645
|
282.248
|
912.790
|
700.917
|
1746.823
|
501.499
|
901.121
|
32.248
|
406.998
|
246.391
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.316
|
2.100
|
1.801
|
-0.414
|
1.333
|
-1.793
|
-1.064
|
-0.703
|
-3.789
|
5.022
|
— | — | — |