Hg_chrom5_TN10mRNA_9249
Organism: Heterodera glycines Gene Locus: chr5:2342531-2344872 Feature type: polypeptideProtein Sequence
Length: 398
(Signal peptide: 1-31)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.935 | 0.876 | 0.685 | 0.347 | 1.968 | 1.611 | 0.718 | 1.382 | 0.949 | 1.154 | 1.142 | 1.33 | 1.396 | 0.821 | 1.282 | 0.754 | 0.659 | 0.723 | 1.546 | 0.665 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_8699
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
|
Yes
|
— | — | — | — | — |
17-ppJ2_pJ2
|
0.999
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
— |
cytoplasm|lysosome_vacuole|golgi_apparatus
|
nucleus
|
KKAQFALKQLKRRHFKK,KRRRKMEKDFRRMEKER,RKAGDVQPEQLSGAEKRKL
|
— | — | — | — |
1-31
|
— |
0.988
|
— |
0.000
|
0.190
|
0.368
|
0.115
|
0.516
|
0.224
|
0.595
|
0.733
|
0.016
|
0.466
|
0.327
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0002177
|
1.000
|
3.000
|
Hsc_gene_10986.t1;Hsc_gene_10986.t2;Hsc_gene_7075.t1
|
— | — | — |
KAF7638367.1 hypothetical protein Mgra_00002049 [Meloidogyne graminicola]
|
No
|
-0.140
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0008233
|
— |
IPR008580+247-398+|IPR042266+248-391+
|
— | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-181
|
1.000
|
182-398
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.529
|
45876.890
|
6.302
|
-1.500
|
32.161
|
12.060
|
51.508
|
48.492
|
16.583
|
15.578
|
40.955
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
green
|
240.837
|
3.503
|
85.059
|
70.149
|
24.081
|
14.112
|
25.793
|
8.493
|
725.693
|
422.696
|
552.552
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
4.365
|
4.182
|
— |
-1.571
|
-0.759
|
0.883
|
— |
1.745
|
— |
-3.227
|
— | — | — |