Hg_chrom5_TN10mRNA_9250
Organism: Heterodera glycines Gene Locus: chr5:2345048-2349808 Feature type: polypeptideProtein Sequence
Length: 580
(Signal peptide: 1-28)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.063 | 1.403 | 0.909 | 0.297 | 0.661 | 0.928 | 0.554 | 1.552 | 1.264 | 1.561 | 0.679 | 1.42 | 1.485 | 1.227 | 1.161 | 0.985 | 0.82 | 1.097 | 1.061 | 0.456 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_8700
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
9-Migratory
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
membrane_bound
|
signal_peptide|transmembrane_domain
|
endoplasmic_reticulum
|
— | — | — | — | — | — |
1-28
|
0.661
|
0.991
|
1.000
|
1.000
|
0.068
|
0.143
|
0.073
|
0.198
|
0.917
|
0.284
|
0.388
|
0.087
|
0.302
|
0.075
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0009171
|
1.000
|
1.000
|
Hsc_gene_7073.t1
|
Hsc_gene_7073.t1
|
— |
Q3SY77.1 UDP-glucuronosyltransferase 3A2 [Homo sapiens]
|
KAI1716740.1 UDP-glucoronosyl and UDP-glucosyl transferase domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0008194
|
GO:0008150_0.810|GO:0003674_0.753|GO:0005575_0.668|GO:0110165_0.662|GO:0009987_0.647|GO:0003824_0.620|GO:0016020_0.610|GO:0016740_0.583|GO:0008152_0.568|GO:0005622_0.567|GO:0016757_0.560|GO:0005737_0.534|GO:0043226_0.532|GO:0008194_0.527|GO:0043229_0.525|GO:0071944_0.511|GO:0043227_0.502
|
IPR002213+29-486_41-559+|IPR035595+392-435+|IPR050271+23-545+
|
— |
PF00201+41-559+UDP-glucoronosyl_and_UDP-glucosyl_transferase
|
G3DSA:3.40.50.2000:FF:000021+308-490+UDP-glucuronosyltransferase
|
PTHR48043+23-545+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-580
|
6lf6_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.812
|
64633.610
|
9.242
|
16.000
|
22.241
|
11.379
|
43.793
|
56.207
|
13.276
|
8.966
|
51.207
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
cyan
|
grey
|
627.777
|
93.434
|
761.919
|
485.330
|
165.292
|
132.505
|
261.045
|
2480.015
|
787.479
|
513.589
|
630.971
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
2.800
|
2.240
|
-0.544
|
-1.587
|
-0.304
|
0.988
|
4.148
|
-3.118
|
— | — | — |
4.992
|
— |