Hg_chrom5_TN10mRNA_9251
Organism: Heterodera glycines Gene Locus: chr5:2352869-2354844 Feature type: polypeptideProtein Sequence
Length: 258
(Signal peptide: 1-22)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.496 | 1.082 | 0.564 | 0.401 | 2.39 | 1.491 | 0.508 | 1.163 | 1.55 | 1.152 | 1.057 | 0.912 | 1.292 | 0.745 | 1.819 | 0.72 | 0.826 | 0.94 | 0.0 | 0.684 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_8701
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
7-Not_Clustered
|
0.890
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
nuclear_localization_signal
|
nucleus
|
— | — | — | — | — | — |
1-22
|
— |
0.786
|
— |
0.000
|
0.777
|
0.148
|
0.009
|
0.435
|
0.303
|
0.074
|
0.096
|
0.003
|
0.030
|
0.091
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0002178
|
3.000
|
1.000
|
Hsc_gene_19996.t1
|
— | — |
O01789.4 Structural maintenance of chromosomes protein 1 [Caenorhabditis elegans]
|
KAF7639885.1 Structural maintenance of chromosomes protein [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515|GO:0005524|GO:0005694|GO:0051276
|
GO:0005575_0.863|GO:0110165_0.858|GO:0008150_0.855|GO:0005622_0.833|GO:0009987_0.821|GO:0043226_0.778|GO:0043229_0.765|GO:0016020_0.743|GO:0071840_0.718|GO:0016043_0.706|GO:0043227_0.672|GO:0006996_0.668|GO:0043231_0.643|GO:0043228_0.641|GO:0043232_0.641|GO:0007049_0.627|GO:0022402_0.626|GO:0032991_0.609|GO:0005634_0.569|GO:0003674_0.536|GO:0005488_0.526|GO:0005694_0.502
|
IPR010935+107-196_108-175+|IPR036277+67-194+
|
SM00968+107-196+
|
PF06470+108-175+SMC_proteins_Flexible_Hinge_Domain
|
G3DSA:1.20.1060.20:FF:000001+87-167+Structural_maintenance_of_chromosomes_1A
|
PTHR18937+36-181+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-97
|
1.000
|
98-258
|
6wge_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.574
|
30248.340
|
6.267
|
-1.000
|
35.659
|
9.302
|
56.202
|
43.798
|
18.217
|
17.442
|
37.597
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
78.308
|
94.746
|
103.224
|
73.492
|
25.130
|
27.868
|
12.980
|
94.877
|
143.715
|
72.690
|
103.129
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
-0.503
|
-0.382
|
-1.579
|
— |
-1.095
|
1.662
|
-2.728
|
— | — | — | — | — |