Hg_chrom5_TN10mRNA_9253
Organism: Heterodera glycines Gene Locus: chr5:2377922-2382161 Feature type: polypeptideProtein Sequence
Length: 538
(Signal peptide: 1-27)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.821 | 0.865 | 0.946 | 1.474 | 0.898 | 1.287 | 0.752 | 0.465 | 1.033 | 0.954 | 0.845 | 0.875 | 1.084 | 1.573 | 0.835 | 1.115 | 1.615 | 0.958 | 0.572 | 0.711 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_8703
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
9-Migratory
|
0.992
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
signal_peptide
|
cell_membrane
|
— |
RSQKKKS
|
— | — | — | — |
1-27
|
0.962
|
1.000
|
0.000
|
0.000
|
0.116
|
0.022
|
0.029
|
0.229
|
0.157
|
0.324
|
0.119
|
0.066
|
0.663
|
0.437
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001305
|
1.000
|
4.000
|
Hsc_gene_14738.t1;Hsc_gene_7051.t1;Hsc_gene_7051.t2;Hsc_gene_7052.t1
|
— | — |
O35604.2 NPC intracellular cholesterol transporter 1 [Mus musculus]
|
KAI1724282.1 patched family domain-containing protein [Ditylenchus destructor]
|
No
|
-0.070
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.960|GO:0005575_0.782|GO:0110165_0.782|GO:0051179_0.777|GO:0051234_0.756|GO:0006810_0.753|GO:0009987_0.717|GO:0033036_0.702|GO:0016020_0.698|GO:0071944_0.689|GO:0010876_0.674|GO:0006869_0.670|GO:0015850_0.670|GO:0015918_0.670|GO:0005886_0.662|GO:0065007_0.624|GO:0050789_0.613|GO:0032501_0.604|GO:0005622_0.583|GO:0030301_0.572|GO:0050896_0.556|GO:0008152_0.553|GO:0044238_0.548|GO:0003674_0.544|GO:0043226_0.537|GO:0051716_0.527|GO:0043229_0.510|GO:0005488_0.509|GO:0005737_0.502
|
IPR032190+38-267+
|
— |
PF16414+38-267+Niemann-Pick_C1_N_terminus
|
— |
PTHR45727+26-267+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
296-538
|
1.000
|
1-295
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.758
|
58501.390
|
5.806
|
-2.500
|
21.190
|
7.993
|
47.584
|
52.416
|
10.595
|
10.595
|
58.736
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
cyan
|
grey
|
71.822
|
40.157
|
79.743
|
61.612
|
62.396
|
59.854
|
53.314
|
115.929
|
76.595
|
79.400
|
78.197
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.760
|
0.480
|
— | — | — | — |
0.850
|
-0.981
|
— | — | — | — | — |