Hg_chrom5_TN10mRNA_9254
Organism: Heterodera glycines Gene Locus: chr5:2383053-2386366 Feature type: polypeptideProtein Sequence
Length: 222
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.943 | 1.152 | 1.392 | 0.311 | 1.652 | 1.04 | 0.483 | 1.351 | 1.602 | 1.4 | 0.887 | 2.65 | 1.001 | 0.693 | 1.287 | 0.579 | 0.517 | 0.751 | 1.04 | 0.795 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_8704
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
27-Not_Clustered
|
0.885
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_export_signal
|
nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.482
|
0.102
|
0.037
|
0.405
|
0.208
|
0.218
|
0.341
|
0.055
|
0.335
|
0.073
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0009172
|
1.000
|
1.000
|
Hsc_gene_7049.t1
|
Hsc_gene_7048.t1;Hsc_gene_7049.t1;Hsc_gene_7067.t1
|
— |
P83876.1 Thioredoxin-like protein 4A [Homo sapiens]
|
OZC10861.1 mitosis protein DIM1 [Onchocerca flexuosa]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0000398|GO:0016592|GO:0046540
|
GO:0005575_0.889|GO:0110165_0.878|GO:0005622_0.853|GO:0016020_0.801|GO:0043226_0.784|GO:0043229_0.760|GO:0043227_0.733|GO:0043231_0.698|GO:0008150_0.685|GO:0009987_0.633|GO:0005634_0.624|GO:0005737_0.601|GO:0008152_0.552|GO:0044238_0.526|GO:0044237_0.519|GO:0009058_0.513
|
IPR004123+1-129_4-128_4-133_10-123+|IPR021384+135-210+|IPR036249+3-127+|IPR037212+128-208+
|
SM01410+4-133+
|
PF02966+4-128+Mitosis_protein_DIM1|PF11221+135-210+Subunit_21_of_Mediator_complex
|
G3DSA:3.40.30.10:FF:000004+1-137+Spliceosomal_protein_DIB1
|
PTHR12052+1-129+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-222
|
8rm5_D
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.838
|
25697.360
|
4.757
|
-9.000
|
32.432
|
10.360
|
48.649
|
51.351
|
14.865
|
17.568
|
41.441
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
lightyellow
|
greenyellow
|
764.531
|
636.522
|
794.632
|
974.395
|
1018.410
|
925.727
|
1204.469
|
1216.488
|
165.409
|
681.774
|
460.474
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
0.477
|
0.404
|
— | — |
0.391
|
0.289
|
— | — | — | — | — | — |
No JSON data available for plots.