Hg_chrom5_TN10mRNA_9257
Organism: Heterodera glycines Gene Locus: chr5:2394299-2396668 Feature type: polypeptideProtein Sequence
Length: 224
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.623 | 1.246 | 0.812 | 0.154 | 1.339 | 0.687 | 0.957 | 1.786 | 1.885 | 0.724 | 1.691 | 1.838 | 0.868 | 1.116 | 1.276 | 0.638 | 0.805 | 0.609 | 1.717 | 0.919 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_8707
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
27-ppJ2_pJ2_J3_J4_Female_Male
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.685
|
0.295
|
0.063
|
0.331
|
0.070
|
0.149
|
0.128
|
0.001
|
0.193
|
0.170
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — | — |
Hsc_gene_7049.t1
|
Y54G2A.75
|
P83876.1 Thioredoxin-like protein 4A [Homo sapiens]
|
KAF7630839.1 Thioredoxin-like protein [Meloidogyne graminicola]
|
No
|
-0.030
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0000398|GO:0046540
|
GO:0005575_0.881|GO:0110165_0.876|GO:0005622_0.867|GO:0043226_0.842|GO:0043229_0.827|GO:0016020_0.789|GO:0043227_0.789|GO:0043231_0.773|GO:0005634_0.693|GO:0005737_0.658|GO:0008150_0.615|GO:0009987_0.547|GO:0008152_0.534|GO:0044238_0.523|GO:0044237_0.518|GO:0009058_0.513
|
IPR004123+111-218_168-218_168-224+
|
SM01410+111-218+
|
PF02966+168-218+Mitosis_protein_DIM1
|
— |
PTHR12052+168-224+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-29
|
1.000
|
30-224
|
8rm5_D
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.799
|
25769.610
|
10.202
|
15.000
|
33.482
|
12.054
|
50.893
|
49.107
|
20.982
|
12.500
|
42.857
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
lightyellow
|
grey60
|
329.172
|
138.882
|
282.113
|
336.973
|
357.360
|
322.778
|
464.599
|
439.319
|
367.762
|
286.048
|
321.068
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.792
|
1.141
|
0.366
|
— | — |
0.537
|
0.340
|
— | — | — | — | — | — |
No JSON data available for plots.