Hg_chrom5_TN10mRNA_9259
Organism: Heterodera glycines Gene Locus: chr5:2401057-2418319 Feature type: polypeptideProtein Sequence
Length: 1,830
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.877 | 0.75 | 0.954 | 0.264 | 1.202 | 1.779 | 0.982 | 1.475 | 0.729 | 0.635 | 0.82 | 1.704 | 0.896 | 1.345 | 1.494 | 1.647 | 1.039 | 0.687 | 0.378 | 0.338 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_8709
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
14-Not_described
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
RPRR,RRRK,RYRPPPDRRRRRRSRSRSRSRDRYSRRRRSRDRRRRSRSRDRSRSRDRSHSRERSRSRDHSRSRNRSSRSRDRSRSRNRGKTR
|
— | — | — | — | — | — |
0.000
|
— | — |
0.880
|
0.050
|
0.004
|
0.286
|
0.077
|
0.019
|
0.021
|
0.012
|
0.061
|
0.028
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001306
|
1.000
|
4.000
|
Hsc_gene_5144.t1;Hsc_gene_7047.t1;Hsc_gene_7047.t2;Hsc_gene_7047.t3
|
— | — | — |
KAI1723477.1 TFIIS helical bundle-like domain-containing protein [Ditylenchus destructor]
|
No
|
-0.620
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0046872
|
— |
IPR000571+1613-1638_1616-1638_1616-1639+|IPR017923+445-519_465-516+|IPR035441+436-522_436-527+|IPR036855+1616-1641+
|
SM00356+1613-1638+
|
PF00642+1616-1638+Zinc_finger_C-x8-C-x5-C-x3-H_type_(and_similar)|PF08711+465-516+TFIIS_helical_bundle-like_domain
|
— |
PTHR46557+626-1019+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-435;479-623;695-838;879-927;979-1830
|
4.000
|
436-478;624-694;839-878;928-978
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.902
|
200027.270
|
8.204
|
32.000
|
28.142
|
7.814
|
56.175
|
43.825
|
15.683
|
12.459
|
54.426
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
skyblue
|
orange
|
3222.030
|
3823.318
|
3119.543
|
3210.870
|
3479.275
|
3552.977
|
3855.541
|
2444.280
|
2683.879
|
3276.296
|
3022.403
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.523
|
-0.389
|
0.151
|
— | — | — |
-0.647
|
0.801
|
— | — | — | — | — |
No JSON data available for plots.