SCN Proteipedia

Hg_chrom5_TN10mRNA_9264

Organism: Heterodera glycines Gene Locus: chr5:2431358-2434033 Feature type: polypeptide

Protein Sequence

Length: 273

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	1.278	1.193	0.333	0.253	0.794	0.939	0.959	1.832	0.895	1.287	1.11	2.801	0.916	0.845	1.495	1.308	1.021	0.722	0.282	0.0	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom5_TN10gene_8714	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	9-Not_Clustered	0.756

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal	nucleus	—	KRMLPSLAKNTKRVSK,KPRIKKPRLSKGRFGPGPSMERRNAR	—	—	18-99	0.966	—	—	0.000	—	—	0.859	0.201	0.007	0.328	0.068	0.048	0.073	0.020	0.092	0.021

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0009174	1.000	1.000	Hsc_gene_22533.t1	—	—	P34555.1 Helix-loop-helix protein 4 [Caenorhabditis elegans]	XP_024506243.1 Myc-type, basic helix-loop-helix (bHLH) domain-containing protein [Strongyloides ratti];CEF67043.1 Myc-type, basic helix-loop-helix (bHLH) domain-containing protein [Strongyloides ratti]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0046983	GO:0008150_0.933\|GO:0005575_0.921\|GO:0110165_0.918\|GO:0005622_0.860\|GO:0043226_0.836\|GO:0043229_0.833\|GO:0016020_0.793\|GO:0009987_0.776\|GO:0003674_0.745\|GO:0065007_0.735\|GO:0050789_0.725\|GO:0050794_0.712\|GO:0005488_0.709\|GO:0043227_0.709\|GO:0043231_0.709\|GO:0032502_0.626\|GO:0048856_0.626\|GO:0005634_0.576\|GO:0008152_0.576\|GO:0009058_0.576\|GO:0044237_0.575\|GO:0050896_0.565\|GO:0044238_0.564\|GO:0044249_0.564\|GO:0009059_0.556\|GO:0043170_0.556\|GO:0010467_0.551\|GO:0006139_0.547\|GO:0048518_0.547\|GO:0019222_0.546\|GO:0031323_0.546\|GO:0080090_0.543\|GO:0032501_0.541\|GO:0097159_0.541\|GO:0034654_0.540\|GO:0048522_0.539\|GO:0003676_0.536\|GO:0060255_0.534\|GO:0005515_0.530\|GO:0009889_0.523\|GO:0016070_0.523\|GO:0031326_0.523\|GO:0032774_0.523\|GO:0090304_0.523\|GO:0141187_0.523\|GO:0010556_0.522\|GO:0010468_0.520\|GO:0019219_0.507\|GO:0007275_0.506\|GO:0006351_0.502	IPR011598+189-242_192-242_195-248+\|IPR036638+191-247_193-247+\|IPR050283+145-247+	SM00353+195-248+	PF00010+192-242+Helix-loop-helix_DNA-binding_domain	—	PTHR23349+145-247+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	47-213;261-273	2.000	1-46;214-260	—	—

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.714	29556.220	11.550	27.000	24.908	7.326	49.084	50.916	18.315	6.593	51.282

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	brown	grey	184.764	9.514	42.593	17.009	7.574	12.080	9.742	24.561	1.043	761.409	435.538

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	1.929	0.703	-1.214	-1.203	—	—	—	-1.193	-9.318	3.959	-6.341	—	-8.157

No JSON data available for plots.

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