Hg_chrom5_TN10mRNA_9266
Organism: Heterodera glycines Gene Locus: chr5:2454889-2468725 Feature type: polypeptideProtein Sequence
Length: 1,609
(Signal peptide: 1-21)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.448 | 2.11 | 0.859 | 0.45 | 1.657 | 1.179 | 0.481 | 0.901 | 1.795 | 1.302 | 1.77 | 1.426 | 1.726 | 0.466 | 0.799 | 0.781 | 0.591 | 0.518 | 0.908 | 0.768 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_8716
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — |
Hg_chrom5_TN10mRNA_9266
|
17-ppJ2_pJ2
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
nucleus
|
QKRKK,KKQNVKSKSLRKRHQR,KKQILLTIMKTENEKKQNK,KKKYFIKSKRNYSKMRKIIKEKE
|
— | — | — | — |
1-21
|
0.998
|
1.000
|
0.000
|
0.000
|
0.620
|
0.193
|
0.011
|
0.539
|
0.112
|
0.152
|
0.124
|
0.040
|
0.132
|
0.147
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0002180
|
1.000
|
3.000
|
Hsc_gene_22531.t1;Hsc_gene_22531.t2;Hsc_gene_22531.t3
|
Hsc_gene_22530.t1
|
— | — |
KAI3420075.1 polynucleotide adenylyltransferase [Globodera pallida]
|
No
|
-0.140
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:1990817
|
GO:0005575_0.672|GO:0110165_0.670|GO:0005622_0.632|GO:0016020_0.619|GO:0043226_0.602|GO:0043229_0.594|GO:0003674_0.553|GO:0008150_0.552|GO:0043227_0.550|GO:0043231_0.529
|
IPR007012+1299-1442+
|
— |
PF04928+1299-1442+Poly(A)_polymerase_central_domain
|
— |
PTHR10682+1295-1602+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
508-726
|
2.000
|
1-507;727-1609
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.714
|
189001.730
|
8.607
|
29.500
|
32.070
|
11.809
|
54.817
|
45.183
|
17.402
|
14.667
|
37.912
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
green
|
1895.489
|
22.094
|
444.308
|
309.066
|
95.199
|
14.156
|
7.809
|
20.332
|
4846.051
|
4315.866
|
4543.088
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
4.101
|
3.668
|
-0.416
|
-1.730
|
-2.735
|
— | — |
-1.238
|
— |
-3.802
|
-5.141
|
— | — |